Learning Objectives: After completing this material, an individual will be able to connect with other data science tools beyond R.

• use unix/linux shell to search and modify project
• build a basic pipeline or workflow in the shell
• high throughput computing

References

• Software Carpentry Unix Shell
• Software Carpentry Automation with Make
• Jenny Bryan pipeline automation
• GNU Make Tutorial (Karl Broman)
• LaTeX Writing Language
• Reproducible Research Tools Links

• Docker & Guix (build & run isolated containers of software)

• Going beyond R
• http://software-carpentry.org
• http://chtc.cs.wisc.edu

• history of teletype and relation to short Unix command names