From crittend@itis.com Mon Mar 10 10:07:08 1997 Date: Sat, 08 Mar 1997 19:46:13 -0500 From: Lyman / Margaret Crittenden To: AnGenMap , Poultry Genome Discussion Group Subject: March 1997 mapping references [ Part 2: "Attached Text" ] JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 3/97 1. Andersson, L.; Archibald, A.; Ashburner, M.; Audun, S.; Barendse, W.; Bitgood, J.; Bottema, C.; Broad, T.; Brown, S.; Burt, D.; Charlier, C.; Copeland, N.; Davis, S.; Davisson, M.; Edwards, J.; Eggen, A.; Elgar, G.; Eppig, J. T.; Franklin, I.; Grewe, P.; Gill, T. 3rd; Graves, J. A.; Hawken, R.; Hetzel, J.; Womack, J.; et, a. l. Comparative genome organization of vertebrates. The First International Workshop on Comparative Genome Organization. Mamm Genome. 7:717-34, 1996 Oct. Department of Animal Breeding and Genetics, Swedish University of Agricultural Science, Uppsala, Sweden. 2. Cockerham, C. C.; Zeng, Z. B. Design III with marker loci. Genetics. 143:1437-56, 1996 Jul. Department of Statistics, North Carolina State University, Raleigh 27695-8203, USA. cockerham@stat.ncsu.edu. 3. Collins, A.; Teague, J.; Keats, B. J.; Morton, N. E. Linkage map integration. Genomics. 36:157-62, 1996 Aug 15. Human Genetics, University of Southampton, Princess Anne Hospital, Level G, Southampton, SO16 5YA, United Kingdom. 4. Elston, R. C. 1996 William Allan Award Address. Algorithms and inferences: the challenge of multifactorial diseases. Am J Hum Genet. 60:255-62, 1997 Feb. Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, Metro-Health Campus, Case Western Reserve University, Cleveland, OH 44109-1998, USA. 5. Eppig, J. T. Comparative maps: adding pieces to the mammalian jigsaw puzzle. Curr Opin Genet Dev. 6:723-30, 1996 Dec. Jackson Laboratory, Bar Harbor, Maine 04609, USA. jte@informatics.jax.org. 6. Filipski, J.; Svetlova, E.; Avril-Fournout, N.; Deschavanne, P.; Bellis, M. New approaches to the mapping of chromosomal domains. Acta Biochim Pol. 43:289-92, 1996. Institut J. Monod, Paris, France. 7. Fu, Y. B.; Ritland, K. Marker-based inferences about epistasis for genes influencing inbreeding depression. Genetics. 144:339-48, 1996 Sep. Department of Botany, University of Toronto, Ontario, Canada. yongbifu@unixg.ubc.ca. 8. Georges, M.; Andersson, L. Livestock genomics comes of age. Genome Res. 6:907-21, 1996 Oct. Department of Genetics, Faculty of Veterinary Medicine, University of Liege, 4000-Liege, Belgium. 9. Gimelfarb, A. Some additional results about polymorphisms in models of an additive quantitative trait under stabilizing selection. J Math Biol. 35:88-96, 1996 Nov. Department of Ecology and Evolution, University of Chicago, IL 60637-1573, USA. sashu@pondside.uchicago.edu. 10. Ginsburg, E. K.; Axenovich, T. I.; Goodman, D. W. On estimation of linkage test power. Genet Epidemiol. 13:355-65, 1996. Department of Anatomy and Anthropology, Sackler Faculty of Medicine, Tel Aviv University, Israel. 11. Ginsburg, E. K.; Axenovich, T. I. On planning of samples for linkage analysis: two ways of a sample size reduction. Genet Epidemiol. 13:343-54, 1996. Department of Anatomy and Anthropology, Sackler Faculty of Medicine, Tel Aviv University, Israel. 12. Groenen, M. A.; de Vries, B. J.; van der Poel, J. J. Alignment of the PiGMaP and USDA linkage maps of porcine chromosomes 3 and 9. Anim Genet. 27:355-7, 1996 Oct. Department of Animal Breeding, Wageningen Agricultural University, The Netherlands. 13. Harley, E.; Bonner, A. J.; Goodman, N. Good maps are straight. Ismb. 4:88-97, 1996. University of Toronto, Dept. of Computer Science, Ont., Canada. eharley@db.toronto.edu. 14. Jin, L.; Macaubas, C.; Hallmayer, J.; Kimura, A.; Mignot, E. Mutation rate varies among alleles at a microsatellite locus: phylogenetic evidence. Proc Natl Acad Sci U S A. 93:15285-8, 1996 Dec 24. Department of Genetics, Stanford University, CA 94305, USA. 15. Law, A. S.; Burt, D. W. qValue--a program to calculate comparative measures of genomic reorganisation from cytogenetic and/or linkage information. Comput Appl Biosci. 12:181-3, 1996 Jun. Division of Molecular Biology, Roslin Institute (Edinburgh), Midlothian, Scotland. Andy.Law@bbsrc.ac.uk. 16. Li, Z.; Rao, D. C. Random effects model for meta-analysis of multiple quantitative sibpair linkage studies. Genet Epidemiol. 13:377-83, 1996. Department of Radiology, Washington University School of Medicine, St. Louis, Missouri, USA. 17. Lin, S. Multipoint linkage analysis via Metropolis jumping kernels. Biometrics. 52:1417-27, 1996 Dec. Department of Statistics, Ohio State University, Columbus 43210, USA. 18. Lin, S.; Speed, T. P. Incorporating crossover interference into pedigree analysis using the chi 2 model. Hum Hered. 46:315-22, 1996 Nov-Dec. Department of Statistics, University of California, Berkeley 94720, USA. 19. Lyons, L. A.; Laughlin, T. F.; Copeland, N. G.; Jenkins, N. A.; Womack, J. E.; O'Brien, S. J. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes [see comments]. Nat Genet. 15:47-56, 1997 Jan. Laboratory of Genomic Diversity, National Cancer Institute, Frederick Cancer Research and Development Center, Maryland 21702-1201, USA. 20. Matise, T. C.; Onis-Keller, H.; Ott, J. Meeting report. Statistical methods in genetic mapping. Genomics. 36:223-5, 1996 Aug 15. Department of Psychiatry, Columbia University, New York, New York, 10032, USA. 21. McIninch, J. D.; Hayes, W. S.; Borodovsky, M. Applications of GeneMark in multispecies environments. Ismb. 4:165-75, 1996. Georgia Institute of Technology, School of Biology, Atlanta 30332-0230, USA. james.mcininch@amber.biology.gatech.edu. 22. Nadeau, J. H.; Sankoff, D. Landmarks in the Rosetta Stone of mammalian comparative maps [news; comment]. Nat Genet. 15:6-7, 1997 Jan. 23. Nadkarni, P. M. Management of evolving map data: data structures and algorithms based on the framework map. Genomics. 30:565-73, 1995 Dec 10. Center for Medical Informatics, Yale University School of Medicine, New Haven, Connecticut 06510, USA. nadkarni@cs.yale.edu. 24. Oetting, W. S.; Lee, H. K.; Flanders, D. J.; Wiesner, G. L.; Sellers, T. A.; King, R. A. Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13 tailed primers. Genomics. 30:450-8, 1995 Dec 10. Department of Medicine, University of Minnesota, Minneapolis 55455, USA. 25. Pritchard, J. K.; Feldman, M. W. Statistics for microsatellite variation based on coalescence. Theor Popul Biol. 50:325-44, 1996 Dec. Department of Biological Sciences, Stanford University, Stanford, California, 94305, USA. 26. Ronin, Y. I.; Korol, A. B.; Fahima, T.; Kirzhner, V. M.; Nevo, E. Sequential estimation of linkage between PCR-generated markers and a target gene employing stepwise bulked analysis. Biometrics. 52:1428-39, 1996 Dec. Institute of Evolution, University of Haifa, Mount Carmel, Israel. 27. Ruane, J.; Colleau, J. J. Marker-assisted selection for a sex-limited character in a nucleus breeding population. J Dairy Sci. 79:1666-78, 1996 Sep. Station de Genetique Quantitative et Appliquee, Centre de Jouy-en-Josas, France. 28. Satagopan, J. M.; Yandell, B. S.; Newton, M. A.; Osborn, T. C. A bayesian approach to detect quantitative trait loci using Markov chain Monte Carlo. Genetics. 144:805-16, 1996 Oct. Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, New York 10021-6094, USA. satago@biost.mskcc.org. 29. Schaid, D. J. General score tests for associations of genetic markers with disease using cases and their parents. Genet Epidemiol. 13:423-49, 1996. Department of Health Sciences Research, Mayo Clinic/Foundation, Rochester, Minnesota 55905, USA. 30. Sise, J. A.; Hillyard, A. L.; Montgomery, G. W. The sheep gene map database (SheepBase) is now available on the World Wide Web. Mamm Genome. 7:1, 1996 Jan. AgResearch Molecular Biology Unit, Department of Biochemistry and Centre for Gene Research, University of Otago, Dunedin, New Zealand. 31. Smit, A. F. The origin of interspersed repeats in the human genome. Curr Opin Genet Dev. 6:743-8, 1996 Dec. Department of Molecular Biotechnology, University of Washington, Seattle 98195, USA. asmit@u.washington.edu. 32. Stassen, A. P.; Groot, P. C.; Eppig, J. T.; Demant, P. Genetic composition of the recombinant congenic strains. Mamm Genome. 7:55-8, 1996 Jan. Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam. 33. Vaiman, D.; Schibler, L.; Bourgeois, F.; Oustry, A.; Amigues, Y.; Cribiu, E. P. A genetic linkage map of the male goat genome. Genetics. 144:279-305, 1996 Sep. Laboratoire de Genetique Biochimique et de Cytogenetique, INRA, Jouy-en-Josas, France. 34. Visscher, P. M.; Thompson, R.; Haley, C. S. Confidence intervals in QTL mapping by bootstrapping. Genetics. 143:1013-20, 1996 Jun. Roslin Institute Edinburgh, Midlothian, Scotland. peter.visscher@ed.ac.uk. 35. Wada, Y.; Yasue, H. Development of an animal genome database and its search system. Comput Appl Biosci. 12:231-5, 1996 Jun. Animal Genome Research Group, National Institute of Animal Industry, Ibaraki, Japan. 36. Wakefield, M. J.; Graves, J. A. M. Comparative maps of vertebrates. Mamm Genome. 7:715-6, 1996 Oct. School of Genetics and Human Variation, La Trobe University, Bundoora, Victoria 3083, Australia. 37. Xu, S.; Atchley, W. R. Mapping quantitative trait loci for complex binary diseases using line crosses. Genetics. 143:1417-24, 1996 Jul. Department of Botany and Plant Sciences, University of California, Riverside 92521-0124, USA. xu@genetics.ucr.edu. 38. Xu, Y.; Mural, R. J.; Uberbacher, E. C. An iterative algorithm for correcting sequencing errors in DNA coding regions. J Comput Biol. 3:333-44, 1996 Fall. Computer Science and Mathematics Division, Oak Ridge National Laboratory, Tennessee 37831-6364, USA. ying@mars.epm.ornl.gov. ^Z [ Part 3: "Attached Text" ] ********************************************************************* Lyman B. Crittenden Phone: 608-251-1676 Margaret H. Crittenden 634 Emerson St., Madison, WI 53715 e-mail: crittend@itis.com ********************************************************************