From crittend@itis.com Thu Jun 15 13:03:12 2000 Date: Wed, 14 Jun 2000 16:50:58 -0500 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: Mapping References, June, 2000 Resent-Date: 14 Jun 2000 21:55:27 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; ************************************************************************* AnGenMap Discussion Mailing List | Mail distributed to 705 members http://www.genome.iastate.edu/community/discuss.html ************************************************************************* JOURNAL REFS. ( MAPPING METHODS AND REVIEWS) NLM 6/00 1. Agarwala, R.; Applegate, D. L.; Maglott, D.; Schuler, G. D.Schaffer, A. A. A fast and scalable radiation hybrid map construction and integration strategy. Genome Res. 10:350-64, 2000. ADDRESS: National Center for Biotechnology Information (NCBI), National Institutes of Health (NIH), Bethesda, Maryland 20894, USA. Medline UID: 20187980 2. Anantharaman, T.; Mishra, B.Schwartz, D. Genomics via optical mapping. III: Contiging genomic DNA. ISMB. 18-27, 1999. ADDRESS: Courant Institute, New York University, NYC 10012, USA. Medline UID: 20248006 3. Basyuk, E.; Bertrand, E.Journot, L. Alkaline fixation drastically improves the signal of in situ hybridization. Nucleic Acids Res. 28:E46, 2000. ADDRESS: UPR 9023 CNRS, Mecanismes Moleculaires des Communications Cellulaires, CCIPE, 141 rue de la Cardonille, 34094 Montpellier Cedex 05, France. basyuk@ccipe.montp.inserm.fr. Medline UID: 20238163 4. Ben-Dor, A.; Chor, B.Pelleg, D. RHO--radiation hybrid ordering. Genome Res. 10:365-78, 2000. ADDRESS: Department of Computer Science, Technion, Haifa 32000, Israel. amirbd@cs.washington.edu. Medline UID: 20187981 5. Brugere, J. F.; Cornillot, E.; Metenier, G.Vivares, C. P. In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes. Nucleic Acids Res. 28:E48, 2000. ADDRESS: Equipe de Parasitologie Moleculaire et Cellulaire, UPRES A CNRS 6023, Universite Blaise Pascal, 63177 Aubiere cedex, France. Medline UID: 20238165 6. Choulakian, V. and Mahdi, S. A new statistic for the analysis of association between trait and polymorphic marker loci. Math Biosci. 164:139-45, 2000. ADDRESS: Department of Mathematics and Statistics, Universite de Moncton, Moncton, New Brunswick, Canada. Medline UID: 20213306 7. Cordell, H. J.; Wedig, G. C.; Jacobs, K. B.Elston, R. C. Multilocus linkage tests based on affected relative pairs. Am J Hum Genet. 66:1273-86, 2000. ADDRESS: Department of Medical Genetics, Wellcome Trust Centre for the Study of Molecular Mechanisms in Disease, Cambridge Institute for Medical Research, Addenbrookes Hospital, Cambridge, CB2 2XY, England, United Kingdom. heather.cordell@cimr.cam.ac.uk. Medline UID: 20206322 8. Douglas, J. A.; Boehnke, M.Lange, K. A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data. Am J Hum Genet. 66:1287-97, 2000. ADDRESS: Department of Biostatistics and Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, 48109, USA. Medline UID: 20206323 9. Gelfi, C.; Vigano, A.; Curcio, M.; Righetti, P. G.; Righetti, S. C.; Corna, E.Zunino, F. Single-strand conformation polymorphism analysis by capillary zone electrophoresis in neutral pH buffer. Electrophoresis. 21:785-91, 2000. ADDRESS: CNR, Institute of Advanced Biomedical Technologies, Segrate (Milano), Italy. gelfi@itba.mi.cnr.it. Medline UID: 20195361 10. Goring, H. H. and Terwilliger, J. D. Linkage analysis in the presence of errors III: marker loci and their map as nuisance parameters. Am J Hum Genet. 66:1298-309, 2000. ADDRESS: Department of Genetics and Development, Columbia University, New York, NY, USA. Medline UID: 20206324 11. Linkage analysis in the presence of errors IV: joint pseudomarker analysis of linkage and/or linkage disequilibrium on a mixture of pedigrees and singletons when the mode of inheritance cannot be accurately specified. Am J Hum Genet. 66:1310-27, 2000. ADDRESS: Department of Genetics and Development, Columbia University, New York, NY, USA. Medline UID: 20206325 12. Henegariu, O.; Bray-Ward, P.Ward, D. C. Custom fluorescent-nucleotide synthesis as an alternative method for nucleic acid labeling. Nat Biotechnol. 18:345-8, 2000. ADDRESS: Department of Genetics, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA. ohenegar@yahoo.com bt0300_345.html t0300_345.html. Medline UID: 20165312 13. Hsu, L.; Zhao, L. P.Aragaki, C. A note on a conditional-likelihood approach for family-based association studies of candidate genes. Hum Hered. 50:194-200, 2000. ADDRESS: Fred Hutchinson Cancer Research Center, Seattle, Wash., USA. lih@fhcrc.org. Medline UID: 20153500 14. Iseli, C.; Jongeneel, C. V.Bucher, P. ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. ISMB. 138-48, 1999. ADDRESS: Swiss Institute of Bioinformatics, Epalinges, Switzerland. Christian.Iseli@isb-sib.ch. Medline UID: 20248020 15. Karp, R. M.; Pe'er, I.Shamir, R. An algorithm combining discrete and continuous methods for optical mapping. ISMB. 159-68, 1999. ADDRESS: Department of Computer Science & Engineering, University of Washington, Seattle 98195-2350, USA. karp@cs.washington.edu. Medline UID: 20248022 16. Larionov, V. Direct isolation of specific chromosomal regions and entire genes by TAR cloning. Genet Eng (N Y). 21:37-55, 1999. ADDRESS: Laboratory of Molecular Genetics, National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC 27709, USA. Medline UID: 20281901 17. Mao, L. Microsatellite analysis. Applications and pitfalls. Ann N Y Acad Sci. 906:55-62, 2000. ADDRESS: Department of Thoracic/Head and Neck Medical Oncology, University of Texas M.D. Anderson Cancer Center, Houston 77030, USA. lmao@mdanderson.org. Medline UID: 20278538 18. Mein, C. A.; Barratt, B. J.; Dunn, M. G.; Siegmund, T.; Smith, A. N.; Esposito, L.; Nutland, S.; Stevens, H. E.; Wilson, A. J.; Phillips, M. S.; Jarvis, N.; Law, S.; de Arruda, M.Todd, J. A. Evaluation of single nucleotide polymorphism typing with invader on PCR amplicons and its automation. Genome Res. 10:330-43, 2000. ADDRESS: Wellcome Trust Centre for the Study of Molecular Mechanisms in Disease, University of Cambridge, Addenbrooke's Hospital, Cambridge CB2 2XY UK. Medline UID: 20187978 19. Nordstrom, T.; Ronaghi, M.; Forsberg, L.; de Faire, U.; Morgenstern, R.Nyren, P. Direct analysis of single-nucleotide polymorphism on double-stranded DNA by pyrosequencing. Biotechnol Appl Biochem. 31 ( Pt 2):107-12, 2000. ADDRESS: Department of Biotechnology, The Royal Institute of Technology, SE-100 44 Stockholm, Sweden. Medline UID: 20211258 20. Pavy, N.; Rombauts, S.; Dehais, P.; Mathe, C.; Ramana, D. V.; Leroy, P.Rouze, P. Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences. Bioinformatics. 15:887-99, 1999. ADDRESS: Laboratoire associe de l'INRA, France. Medline UID: 20207958 21. Pinton, P.; Schibler, L.; Cribiu, E.; Gellin, J.Yerle, M. Localization of 113 anchor loci in pigs: improvement of the comparative map for humans, pigs, and goats. Mamm Genome. 11:306-15, 2000. ADDRESS: Institut National de la Recherche Agronomique, Departement de Genetique Animale, Castanet-Tolosan, France. Medline UID: 20222772 22. Rabinowitz, D.; Zanchi, A.; Schaumberg, D.Krolewski, A. Testing mode of inheritance of a candidate mutation at a quantitative trait locus. Hum Hered. 50:184-8, 2000. ADDRESS: Department of Statistics, Columbia University, New York, N.Y., USA. Medline UID: 20153498 23. Shmatkov, A. M.; Melikyan, A. A.; Chernousko, F. L.Borodovsky, M. Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes. Bioinformatics. 15:874-86, 1999. ADDRESS: Russian Academy of Science, Institute for Problems in Mechanics, Moscow, Russia. Medline UID: 20207957 24. Siegmund, K. D. and Todorov, A. A. Linkage analysis for diseases with variable age of onset. Hum Hered. 50:205-10, 2000. ADDRESS: Department of Preventive Medicine, University of Southern California, Los Angeles, Calif. USA. kims@rcf.usc.edu. Medline UID: 20153502 25. Suzuki, H.; Itoh, F.; Toyota, M.; Kikuchi, T.; Kakiuchi, H.; Hinoda, Y.Imai, K. Quantitative DNA methylation analysis by fluorescent polymerase chain reaction single-strand conformation polymorphism using an automated DNA sequencer. Electrophoresis. 21:904-8, 2000. ADDRESS: First Department of Internal Medicine, Sapporo Medical University, Japan. Medline UID: 20229262 26. Tonon, G.; Roschke, A.; Stover, K.; Shou, Y.; Kuehl, W. M.Kirsch, I. R. Spectral karyotyping combined with locus-specific FISH simultaneously defines genes and chromosomes involved in chromosomal translocations. Genes Chromosomes Cancer. 27:418-23, 2000. ADDRESS: Genetics Department, Medicine Branch, National Cancer Institute, Bethesda, MD 20889-5105, USA. Medline UID: 20185790 27. Tu, I. P.; Balise, R. R.Whittemore, A. S. Detection of disease genes by use of family data. II. Application to nuclear families. Am J Hum Genet. 66:1341-50, 2000. ADDRESS: Department of Health Research and Policy, Stanford University School of Medicine, Stanford, CA, 94305, USA. Medline UID: 20206327 28. Whittemore, A. S. and Tu, I. P. Detection of disease genes by use of family data. I. Likelihood-based theory. Am J Hum Genet. 66:1328-40, 2000. ADDRESS: Department of Health Research and Policy, Stanford University School of Medicine, Stanford, CA, 94305, USA. alicesw@leland.stanford.edu. Medline UID: 20206326 +--------------------------------------+--------------------------------+ | U.S. PIG GENOME COORDINATION PROJECT | Paid for by funds from the | | WEB: http://www.genome.iastate.edu | NRSP8 USDA /CSREES sponsored | | LIST: angenmap@db.genome.iastate.edu | PigGenome Coordination Program | +--------------------------------------+--------------------------------+