From crittend@itis.com Tue Oct 17 15:45:31 2000 Date: Tue, 17 Oct 2000 15:32:59 -0500 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: October, 2000 Mapping References Resent-Date: 17 Oct 2000 20:38:54 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 744 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) PUB MED 10/00 1. Alter, O.; Brown, P. O.Botstein, D. Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci U S A. 97:10101-6, 2000. ADDRESS: Departments of Genetics and Biochemistry, Stanford University, Stanford, CA 94305, USA. orly@genome.stanford.edu. Medline UID: 20420339 2. Avilion, A. A.; Bell, D. M.Lovell-Badge, R. Micro-capillary tube in situ hybridisation: a novel method for processing small individual samples. Genesis. 27:76-80, 2000. ADDRESS: MRC, National Institute for Medical Research, London, United Kingdom. aavilio@nimr.mrc.ac.uk. Medline UID: 20349896 3. Beuzen, N. D.; Stear, M. J.Chang, K. C. Molecular markers and their use in animal breeding [see comments]. Vet J. 160:42-52, 2000. ADDRESS: Department of Veterinary Pathology, Univesity of Galsgow, UK. Medline UID: 20405067 4. Bussemaker, H. J.; Li, H.Siggia, E. D. From the cover: building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis. Proc Natl Acad Sci U S A. 97:10096-100, 2000. ADDRESS: Center for Studies in Physics and Biology, The Rockefeller University, Box 25, 1230 York Avenue, New York, NY 10021, USA. Medline UID: 20420338 5. Cardon, L. R. A sib-pair regression model of linkage disequilibrium for quantitative traits. Hum Hered. 50:350-8, 2000. ADDRESS: Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK. lon@well.ox.ac.uk. Medline UID: 20359320 6. Carlborg, O.; Andersson, L.Kinghorn, B. The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci. Genetics. 155:2003-10, 2000. ADDRESS: Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala Biomedical Center, S-751 24 Uppsala, Sweden. orjan.calborg@hgen.slu.se. Medline UID: 20384606 7. Collins, A. Linkage disequilibrium mapping using single nucleotide polymorphisms--which population? Pac Symp Biocomput. 651-62, 2000. ADDRESS: Department of Human Genetics, University of Southampton, Southampton General Hospital. arc@soton.ac.uk. Medline UID: 20360670 8. Dillon, N. and Sabbattini, P. Functional gene expression domains: defining the functional unit of eukaryotic gene regulation. Bioessays. 22:657-65, 2000. ADDRESS: Gene Regulation and Chromatin Group, MRC Clinical Sciences Centre, London. niall.dillon@csc.mrc.ac.uk. Medline UID: 20340565 9. Ellis, M. C. "Spot-on" SNP genotyping. Genome Res. 10:895-7, 2000. ADDRESS: Exelixis, Inc., South San Francisco, CA 94083-0511 USA. ellis@exelixis.com. Medline UID: 20359832 10. Ewing, R. M. and Claverie, J. M. EST databases as multi-conditional gene expression datasets. Pac Symp Biocomput. 430-42, 2000. ADDRESS: Carnegie Institution of Washington, Department of Plant Biology, Stanford, California 94305, USA. ewing@genome.stanford.edu. Medline UID: 20360648 11. Glusman, G. and Lancet, D. GESTALT: a workbench for automatic integration and visualization of large-scale genomic sequence analyses. Bioinformatics. 16:482-3, 2000. ADDRESS: Department of Molecular Genetics and the Crown Human Genome Center, The Weizmann Institute of Science, Rehovot 76100, Israel. Gustavo@bioinfo.weizmann.ac.il. Medline UID: 20330592 12. Guo, S. W. Gene-environment interaction and the mapping of complex traits: some statistical models and their implications. Hum Hered. 50:286-303, 2000. ADDRESS: The M. McGee National Research Center for Juvenile Diabetes, Department of Pediatrics, Medical College of Wisconsin, Milwaukee 53226-0509, USA. swguo@mcw.edu. Medline UID: 20341395 13. Gene-environment interactions and the affected-sib-pair designs. Hum Hered. 50:271-85, 2000. ADDRESS: The M. McGee National Research Center for Juvenile Diabetes, Department of Pediatrics, Medical College of Wisconsin, Milwaukee 53226-0509, USA. swguo@mcw.edu. Medline UID: 20341394 14. Guyon, F.; Vaysseix, G.Barillot, E. MappetShow: non-linear visualization for genome data. Pac Symp Biocomput. 206-17, 2000. ADDRESS: GIS Infobiogen, Villejuif, France. Medline UID: 20360627 15. Hoh, J. and Hodge, S. E. A measure of phase ambiguity in pairs of SNPs in the presence of linkage disequilibrium. Hum Hered. 50:359-64, 2000. ADDRESS: Laboratory of Statistical Genetics, The Rockefeller University, New York, NY 10021, USA. jhoh@linkage.rockefeller.edu. Medline UID: 20359321 16. Holm, R. A highly sensitive nonisotopic detection method for in situ hybridization. Appl Immunohistochem Molecul Morphol. 8:162-5, 2000. ADDRESS: Department of Pathology, Norwegian Radium Hospital, Montebello, Oslo, Norway. Ruth.holm@labmed.uio.no. Medline UID: 20392746 17. Hospital, F.; Goldringer, I.Openshaw, S. Efficient marker-based recurrent selection for multiple quantitative trait loci. Genet Res. 75:357-68, 2000. ADDRESS: Station de Genetique Vegetale, INRA/UPS/INAPG, Gif sur Yvette, France. fred@moulon.inra.fr. Medline UID: 20352336 18. Lander, E. S. Genes and genomes. Harvey Lect. 93:35-48, 1997-1998. ADDRESS: Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology, Cambridge, USA. Medline UID: 20397012 19. Larsson, M.; Graslund, S.; Yuan, L.; Brundell, E.; Uhlen, M.; Hoog, C.Stahl, S. High-throughput protein expression of cDNA products as a tool in functional genomics. J Biotechnol. 80:143-57, 2000. ADDRESS: Department of Biotechnology, Royal Institute of Technology, S-100 44, Stockholm, Sweden. Medline UID: 20371174 20. Liang, F.; Holt, I.; Pertea, G.; Karamycheva, S.; Salzberg, S. L.Quackenbush, J. An optimized protocol for analysis of EST sequences. Nucleic Acids Res. 28:3657-65, 2000. ADDRESS: The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA. Medline UID: 20440413 21. Lishanski, A. Screening for single-nucleotide polymorphisms using branch migration inhibition in PCR-amplified DNA. Clin Chem. 46:1464-70, 2000. ADDRESS: Advanced Diagnostics Group, Dade Behring Inc, San Jose, CA 95135, USA. alla_lishanski@dadebehring.com. Medline UID: 20431984 22. Liu, Y. and Zeng, Z. B. A general mixture model approach for mapping quantitative trait loci from diverse cross designs involving multiple inbred lines. Genet Res. 75:345-55, 2000. ADDRESS: Department of Statistics, North Carolina State University, Raleigh 27695-8203, USA. yliu@statgen.ncsu.edu. Medline UID: 20352335 23. March, R. E. Gene mapping by linkage and association analysis. Mol Biotechnol. 13:113-22, 1999. ADDRESS: Research & Development Genetics Department, Astra Zeneca, Macclesfield, Cheshire, UK. Medline UID: 20390183 24. McCarthy, L. C.; Bihoreau, M. T.; Kiguwa, S. L.; Browne, J.; Watanabe, T. K.; Hishigaki, H.; Tsuji, A.; Kiel, S.; Webber, C.; Davis, M. E.; Knights, C.; Smith, A.; Critcher, R.; Huxtall, P.; Hudson, J. R. Jr; Ono, T.; Hayashi, H.; Takagi, T.; Nakamura, Y.; Tanigami, A.; Goodfellow, P. N.; Lathrop, G. M.James, M. R. A whole-genome radiation hybrid panel and framework map of the rat genome. Mamm Genome. 11:791-5, 2000. ADDRESS: Department of Genetics, University of Cambridge, Tennis Court Road, Cambridge, CB2 3EH, UK. lm93678@GlaxoWellcome.co.uk. Medline UID: 20424796 25. Nolan, P. M.; Peters, J.; Strivens, M.; Rogers, D.; Hagan, J.; Spurr, N.; Gray, I. C.; Vizor, L.; Brooker, D.; Whitehill, E.; Washbourne, R.; Hough, T.; Greenaway, S.; Hewitt, M.; Liu, X.; McCormack, S.; Pickford, K.; Selley, R.; Wells, C.; Tymowska-Lalanne, Z.; Roby, P.; Glenister, P.; Thornton, C.; Thaung, C.; Stevenson, J. A.; Arkell, R.; Mburu, P.; Hardisty, R.; Kiernan, A.; Erven, A.; Steel, K. P.; Voegeling, S.; Guenet, J. L.; Nickols, C.; Sadri, R.; Nasse, M.; Isaacs, A.; Davies, K.; Browne, M.; Fisher, E. M.; Martin, J.; Rastan, S.; Brown, S. D.Hunter, J. A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse. Nat Genet. 25:440-3, 2000. ADDRESS: MRC Mammalian Genetics Unit and Mouse Genome Centre, Harwell, UK. 0800_440.html 800_440.html. Medline UID: 20392399 26. Nolan, P. M.; Peters, J.; Vizor, L.; Strivens, M.; Washbourne, R.; Hough, T.; Wells, C.; Glenister, P.; Thornton, C.; Martin, J.; Fisher, E.; Rogers, D.; Hagan, J.; Reavill, C.; Gray, I.; Wood, J.; Spurr, N.; Browne, M.; Rastan, S.; Hunter, J.Brown, S. D. Implementation of a large-scale ENU mutagenesis program: towards increasing the mouse mutant resource. Mamm Genome. 11:500-6, 2000. ADDRESS: MRC Mammalian Genetics Unit and UK Mouse Genome Centre, Harwell, UK. p.nolan@har.mrc.ac.uk. Medline UID: 20344592 27. Rebeiz, M. and Lewin, H. A. Compass of 47,787 cattle ESTs. Anim Biotechnol. 11:75-241, 2000. ADDRESS: Department of Animal Sciences, The W.M. Keck Center for Comparative and Functional Genomics, University of Illinois at Urbana-Champaign, 61801, USA. Medline UID: 20407970 28. Ren, J. High-throughput single-strand conformation polymorphism analysis by capillary electrophoresis. J Chromatogr B Biomed Sci Appl. 741:115-28, 2000. ADDRESS: Department of Pharmacology, University of Bergen, Norway. jicun.ren@farm.uib.no. Medline UID: 20328983 29. Roach, J. C.; Thorsson, V.Siegel, A. F. Parking strategies for genome sequencing. Genome Res. 10:1020-30, 2000. ADDRESS: The Institute for Systems Biology, Seattle, Washington 98105 USA. jroach@systembiology.org. Medline UID: 20359845 30. Soewarto, D.; Fella, C.; Teubner, A.; Rathkolb, B.; Pargent, W.; Heffner, S.; Marschall, S.; Wolf, E.; Balling, R.Hrabe de Angelis, M. The large-scale Munich ENU-mouse-mutagenesis screen. Mamm Genome. 11:507-10, 2000. ADDRESS: GSF Research Center, Institute of Experimental Genetics, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany. Medline UID: 20344593 31. Symons, R. C.; Marshall, V. M.Foote, S. J. Improvements in allelic discrimination of microsatellite markers using denaturing polyacrylamide gel electrophoresis. Mamm Genome. 11:671-4, 2000. ADDRESS: The Walter and Eliza Hall Institute for Medical Research, C/-Royal Melbourne Post Office, VIC 3050, Australia. Medline UID: 20380827 32. Thomas, S. C. and Hill, W. G. Estimating quantitative genetic parameters using sibships reconstructed from marker data. Genetics. 155:1961-72, 2000. ADDRESS: Institute of Cell, Animal and Population Biology, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom. sthomas@srv0.bio.ed.ac.uk. Medline UID: 20384602 33. Wells, C. and Brown, S. D. Genomics meets genetics: towards a mutant map of the mouse. Mamm Genome. 11:472-7, 2000. ADDRESS: MRC Mammalian Genetics Unit and Mouse Genome Centre, Harwell, Oxon OX11 ORD, UK. Medline UID: 20344588 34. Xiong, M.; Akey, J.Jin, L. The haplotype linkage disequilibrium test for genome-wide screens: its power and study design. Pac Symp Biocomput. 675-86, 2000. ADDRESS: Human Genetics Center, University of Texas-Houston 77030, USA. mxiong@utsph.sph.uth.tmc.edu. Medline UID: 20360672 35. 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Medline UID: 20400337 **************************************************************************** ****************** Lyman/Margaret Crittenden Phone: 608-798-0791 8550 Highway 19 e-mail: crittend@itis.com Cross Plains, WI 53528-9300 USA **************************************************************************** ****************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/pig