From crittend@itis.com Thu Mar 16 16:13:59 2000 Date: Wed, 15 Mar 2000 16:21:17 -0600 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: March, 2000 Mapping References Resent-Date: Wed, 15 Mar 2000 16:21:17 -0600 Resent-From: angenmap@genome.ansci.iastate.edu ************************************************************************* AnGenMap Discussion Mailing List | Mail distributed to 676 members http://www.genome.iastate.edu/community/discuss.html ************************************************************************* JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 3/2000 1. Abecasis, G. R.; Cardon, L. R.Cookson, W. O. A general test of association for quantitative traits in nuclear families. Am J Hum Genet. 66:279-92, 2000. ADDRESS: The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, OX3 7BN, United Kingdom. goncalo@well.ox.ac.uk. Medline UID: 20100629 2. Atienzar, F.; Evenden, A.; Jha, A.; Savva, D.Depledge, M. Optimized RAPD analysis generates high-quality genomic DNA profiles at high annealing temperature. Biotechniques. 28:52-4, 2000. ADDRESS: Department of Biological Sciences, University of Plymouth, England, UK. fatienzar@plymouth.ac.uk. Medline UID: 20114029 3. Barlati, S.; Zoppi, N.; Copeta, A.; Tavian, D.; De Petro, G.Colombi, M. Quantitative in situ hybridization for the evaluation of gene expression in asynchronous and synchronized cell cultures and in tissue sections. Histol Histopathol. 14:1231-40, 1999. ADDRESS: Department of Biomedical Sciences and Biotechnology, University of Brescia, Medical Faculty, Italy. barlati@med.unibs.it. Medline UID: 99436827 4. Bovenhuis, H. and Spelman, R. J. Selective genotyping to detect quantitative trait loci for multiple traits in outbred populations. J Dairy Sci. 83:173-80, 2000. ADDRESS: Animal Breeding and Genetics Group, Wageningen Institute of Animal Sciences, The Netherlands. henk.bovenhuis@alg.vf.wau.nl. Medline UID: 20123373 5. Brent, R. Genomic biology. Cell. 100:169-83, 2000. ADDRESS: The Molecular Sciences Institute, Berkeley, California 94704, USA. Medline UID: 20112467 6. Childs, G. V. In situ hybridization with nonradioactive probes. Methods Mol Biol. 123:131-41, 2000. ADDRESS: Department of Anatomy and Neurosciences, University of Texas Medical Branch, Galveston, USA. Medline UID: 20015489 7. Cordell, H. J. and Elston, R. C. Fieller's theorem and linkage disequilibrium mapping. Genet Epidemiol. 17:237-52, 1999. ADDRESS: Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44109, USA. cordell@darwin.cwru.edu. Medline UID: 99452784 8. Da, Y.; VanRaden, P. M.; Ron, M.; Beever, J. E.; Paszek, A. A.; Song, J.; Wiggans, G. R.; Ma, R.; Weller, J. I.Lewin, H. A. Standardization and conversion of marker polymorphism measures. Anim Biotechnol. 10:25-35, 1999. ADDRESS: Program in Comparative Genomics, Department of Veterinary PathoBiology, University of Minnesota, Saint Paul 55108, USA. y-da@tc.umn.edu. Medline UID: 20118589 9. Dolan, C. V.; Boomsma, D. I.Neale, M. C. A note on the power provided by sibships of sizes 2, 3, and 4 in genetic covariance modeling of a codominant QTL. Behav Genet. 29:163-70, 1999. ADDRESS: Department of Psychology, University of Amsterdam, The Netherlands. op_dolan@macmail.psy.uva.nl. Medline UID: 20015645 10. Farnir, F.; Coppieters, W.; Arranz, J. J.; Berzi, P.; Cambisano, N.; Grisart, B.; Karim, L.; Marcq, F.; Moreau, L.; Mni, M.; Nezer, C.; Simon, P.; Vanmanshoven, P.; Wagenaar, D.Georges, M. Extensive genome-wide linkage disequilibrium in cattle. Genome Res. 10:220-7, 2000. ADDRESS: Department of Genetics, Faculty of Veterinary Medicine, University of Liege (B43), 4000-Liege, Belgium. Medline UID: 20138500 11. Gellin, J.; Brown, S.; Marshall Graves, J. A.; Rothschild, M.; Schook, L.; Womack, J.Yerle, M. Comparative gene mapping workshop: progress in agriculturally important animals. Mamm Genome. 11:140-4, 2000. ADDRESS: Laboratoire de Genetique Cellulaire, Castanet-Tolosan, France. Medline UID: 20122166 12. Germer, S.; Holland, M. J.Higuchi, R. High-throughput SNP allele-frequency determination in pooled DNA samples by kinetic PCR. Genome Res. 10:258-66, 2000. ADDRESS: Roche Molecular Systems, Alameda, California 94501 USA. Soren.Germer@Roche.com. Medline UID: 20138504 13. Hargrave, M. and Koopman, P. In situ hybridization of whole-mount embryos. Methods Mol Biol. 123:279-89, 2000. ADDRESS: Centre for Molecular and Cellular Biology, University of Queensland, Brisbane, Australia. Medline UID: 20015498 14. Koudande, O. D.; Iraqi, F.; Thomson, P. C.; Teale, A. J.van Arendonk, J. A. Strategies to optimize marker-assisted introgression of multiple unlinked QTL. Mamm Genome. 11:145-50, 2000. ADDRESS: Animal Breeding and Genetics Group, Wageningen Institute of Animal Sciences, Wageningen University, The Netherlands. Medline UID: 20122167 15. Kuklin, A.; Munson, K.; Taylor, P.Gjerde, D. Isolation and analysis of amplified cDNA fragments during detection of unknown polymorphisms with temperature modulated heteroduplex chromatography. Mol Biotechnol. 11:257-61, 1999. ADDRESS: Transgenomic, Inc., San Jose, CA 95131, USA. Medline UID: 99432860 16. Lareo, L. R. and Acevedo, O. E. Sequence mapping in a three-dimensional space by a numeric method and some of its applications. Acta Biotheor. 47:123-8, 1999. ADDRESS: Department of Biochemistry and Nutrition, Pontificia Universidad Javeriana, School of Sciences, Santafe de Bogota, Colombia, SA. llareo@javercol.javeriana.edu.co. Medline UID: 20048989 17. Le Moine, C. Quantitative in situ hybridization using radioactive probes to study gene expression in heterocellular systems. Methods Mol Biol. 123:143-56, 2000. ADDRESS: CNRS UMR 5541, Laboratoire d'Histologie-Embryologie, Universite Victor Segalen Bordeaux II, France. Medline UID: 20015490 18. Mellersh, C. S.; Hitte, C.; Richman, M.; Vignaux, F.; Priat, C.; Jouquand, S.; Werner, P.; Andre, C.; DeRose, S.; Patterson, D. F.; Ostrander, E. A.Galibert, F. An integrated linkage-radiation hybrid map of the canine genome. Mamm Genome. 11:120-30, 2000. ADDRESS: Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109-1024, USA. Medline UID: 20122163 19. Nuovo, G. J. In situ localization of PCR-amplified DNA and cDNA. Methods Mol Biol. 123:217-38, 2000. ADDRESS: MGN Medical Research Laboratories, Setauket, NY, USA. Medline UID: 20015495 20. Olson, J. M.; Witte, J. S.Elston, R. C. Genetic mapping of complex traits. Stat Med. 18:2961-81, 1999. ADDRESS: Department of Epidemiology and Biostatistics, Rammelkamp Center for Education and Research, MetroHealth Campus, Case Western Reserve University, Cleveland, Ohio 44109, USA. olson@darwin.cwru.edu. Medline UID: 99455054 21. Ott, J. Predicting the range of linkage disequilibrium. Proc Natl Acad Sci U S A. 97:2-3, 2000. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, 1230 York Avenue, New York, NY 10021-6399, USA. Medline UID: 20087190 22. Ott, J. and Bhat, A. Linkage analysis in heterogeneous and complex traits. Eur Child Adolesc Psychiatry. 8 Suppl 3:43-6, 1999. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, New York, NY 10021, USA. ott@rockefeller.edu. Medline UID: 20103724 23. Perez-Enciso, M. and Toro, M. A. Robust QTL effect estimation using the minimum distance method. Heredity. 83 ( Pt 3):347-53, 1999. ADDRESS: Area de Produccio Animal, Centre UdL-IRTA, 25198 Lleida, Spain. miguel.perez@irta.es. Medline UID: 99436029 24. Rodriguez-Tome, P. and Lijnzaad, P. RHdb: the radiation hybrid database. Nucleic Acids Res. 28:146-7, 2000. ADDRESS: EMBL Outstation, Hinxton-The European Bioinformatics Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. rhdb@ebi.ac.uk. Medline UID: 20063240 25. Sauer, S.; Lechner, D.; Berlin, K.; Lehrach, H.; Escary, J. L.; Fox, N.Gut, I. G. A novel procedure for efficient genotyping of single nucleotide polymorphisms. Nucleic Acids Res. 28:E13, 2000. ADDRESS: Max-Planck-Institute for Molecular Genetics, Abteilung Lehrach, Ihnestrasse 73, 14195 Berlin-Dahlem, Germany. Medline UID: 20133182 26. Schultz, S.; Smith, D. R.; Mock, J. J.Schultz, D. A. Single-target molecule detection with nonbleaching multicolor optical immunolabels. Proc Natl Acad Sci U S A. 97:996-1001, 2000. ADDRESS: Department of Physics 0319, University of California, 9500 Gilman Drive, La Jolla, CA 92093, USA. Medline UID: 20122560 27. Smith, J. M. The detection and measurement of recombination from sequence data. Genetics. 153:1021-7, 1999. ADDRESS: School of Biological Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom. Medline UID: 99442401 28. Smith, M. D.; Parker, A.; Wikaningrum, R.Coleman, M. Combined immunohistochemical labeling and in situ hybridization to colocalize mRNA and protein in tissue sections. Methods Mol Biol. 123:165-75, 2000. ADDRESS: Repatriation General Hospital, Rheumatology Research Unit, Daw Park, Australia. Medline UID: 20015492 29. Waddington, D.; Springbett, A. J.Burt, D. W. A chromosome-based model for estimating the number of conserved segments between pairs of species from comparative genetic maps. Genetics. 154:323-32, 2000. ADDRESS: Roslin Institute (Edinburgh), Roslin, Midlothian EH25 9PS, Scotland. dave.waddington@bbsrc.ac.uk. Medline UID: 20094773 30. Waller, R. F. and McFadden, G. I. In situ hybridization for electron microscopy. Methods Mol Biol. 123:259-77, 2000. ADDRESS: Department of Botany, University of Melbourne, Parkville, Victoria, Australia. Medline UID: 20015497 31. Wang, J. and Hill, W. G. Marker-assisted selection to increase effective population size by reducing Mendelian segregation variance. Genetics. 154:475-89, 2000. ADDRESS: Institute of Cell, Animal and Population Biology, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom. jinliang.wang@ed.ac.uk. Medline UID: 20094786 32. Webb, G. C. Radioactive in situ hybridization to animal chromosomes. Methods Mol Biol. 123:29-50, 2000. ADDRESS: Department of Obstetrics and Gynaecology, Queen Elizabeth Hospital, Woodville, Australia. Medline UID: 20015483 33. Yang, F.; O'Brien, P. C.; Milne, B. S.; Graphodatsky, A. S.; Solanky, N.; Trifonov, V.; Rens, W.; Sargan, D.Ferguson-Smith, M. A. A complete comparative chromosome map for the dog, red fox, and human and its integration with canine genetic maps. Genomics. 62:189-202, 1999. ADDRESS: Department of Clinical Veterinary Medicine, University of Cambridge, England. Medline UID: 20079151 34. Yi, N. and Xu, S. A random model approach to mapping quantitative trait loci for complex binary traits in outbred populations. Genetics. 153:1029-40, 1999. ADDRESS: Department of Botany, University of California, Riverside, California 92521, USA. Medline UID: 99442402 35. Zhao, H.; Merikangas, K. R.Kidd, K. K. On a randomization procedure in linkage analysis. Am J Hum Genet. 65:1449-56, 1999. ADDRESS: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT, USA. hongyu.zhao@yale.edu. 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