From crittend@itis.com Mon Mar 19 08:52:52 2001 Date: Sun, 18 Mar 2001 14:48:35 -0600 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: March 2001 Mapping references Resent-Date: 18 Mar 2001 21:18:38 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 812 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ There are a lot of references to make up for year end processing at Medline. JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 3/01 1. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 408:796-815, 2000. Medline UID: 21016718 2. Abdrakhmanov, I.; Lodygin, D.; Geroth, P.; Arakawa, H.; Law, A.; Plachy, J.; Korn, B.Buerstedde, J. M. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Genome Res. 10:2062-9, 2000. ADDRESS: Heinrich-Pette-Institut for Experimental Virology and Immunology, Department of Cellular Immunology, 20251 Hamburg, Germany. Medline UID: 20568495 3. Ahn, S. C.; Baek, B. S.; Oh, T.; Song, C. S.Chatterjee, B. Rapid mini-scale plasmid isolation for DNA sequencing and restriction mapping. Biotechniques. 29:466-8, 2000. ADDRESS: University of Texas Health Science Center at San Antonio, USA. Medline UID: 20451812 4. Aksenovich, T. I.; Svishcheva, G. R.Aul'chenko, I. S. [Mapping of genes determining animal quantitative traits: a method for partitioning variances]. Genetika. 36:986-93, 2000. ADDRESS: Institute of Cytology and Genetics, Russian Academy of Sciences, Novosibirsk, Russia. Medline UID: 20450001 5. Amos, C. I.; Gu, X.; Chen, J.Davis, B. R. Least squares estimation of variance components for linkage. Genet Epidemiol. 19 Suppl 1:S1-7, 2000. ADDRESS: Department of Epidemiology, University of Texas - M.D. Anderson Cancer Center, Houston 77030, USA. camos@mdanderson.org. Medline UID: 20506554 6. Amos, C. I. and Page, G. Cost of linkage versus association methods. Adv Genet. 42:213-21, 2001. ADDRESS: Department of Epidemiology and Biomathematics, The University of Texas M.D. Anderson Cancer Center, Houston 77030, USA. Medline UID: 20488794 7. Andrew, T. Genetic epidemiology of complex traits. Twin Res. 3:178, 2000. ADDRESS: Twin Research Unit, St Thomas' Hospital, London. toby.andrew@kcl.ac.uk. Medline UID: 20491599 8. Blangero, J.; Williams, J. T.Almasy, L. Robust LOD scores for variance component-based linkage analysis. Genet Epidemiol. 19 Suppl 1:S8-14, 2000. ADDRESS: Department of Genetics, Southwest Foundation for Biomedical Research, San Antonio, Texas 78245-0549, USA. john@darwin.sfbr.org. Medline UID: 20506555 9. Variance component methods for detecting complex trait loci. Adv Genet. 42:151-81, 2001. ADDRESS: Department of Genetics, Southwest Foundation for Biomedical Research, San Antonio, Texas 78245, USA. Medline UID: 20488791 10. Boerwinkle, E.; Hixson, J. E.Hanis, C. L. Peeking under the peaks: following up genome-wide linkage analyses. Circulation. 102:1877-8, 2000. Medline UID: 20491601 11. Borecki, I. B. and Suarez, B. K. Linkage and association: basic concepts. Adv Genet. 42:45-66, 2001. ADDRESS: Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA. Medline UID: 20488784 12. Brown, S. D. Mutagenesis and genomics in the mouse: towards systematic studies of mammalian gene function. Novartis Found Symp. 229:71-4; discussion 74-8, 2000. ADDRESS: UK Mouse Genome Centre, Harwell, Oxfordshire, UK. Medline UID: 20537101 13. Cagney, G.; Uetz, P.Fields, S. High-throughput screening for protein-protein interactions using two-hybrid assay. Methods Enzymol. 328:3-14, 2000. 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ADDRESS: Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington 98195-7720, USA. warwick@stat.washington.edu. Medline UID: 20561209 22. Dipple, K. M. and McCabe, E. R. Modifier genes convert "simple" Mendelian disorders to complex traits. Mol Genet Metab. 71:43-50, 2000. ADDRESS: Department of Pediatrics, Mattel Children's Hospital at UCLA, Los Angeles, CA, USA. Medline UID: 20459356 23. Du, F. X. and Hoeschele, I. Estimation of additive, dominance and epistatic variance components using finite locus models implemented with a single-site Gibbs and a descent graph sampler. Genet Res. 76:187-98, 2000. ADDRESS: Department of Dairy Science and Statistics, Virginia Tech, Blacksburg, VA 24061-0315, USA. Medline UID: 21019325 24. Eaves, L. J. and Sullivan, P. Genotype-environment interaction in transmission disequilibrium tests. Adv Genet. 42:223-40, 2001. ADDRESS: Department of Human Genetics, Virginia Institute for Psychiatric and Behavioral Genetics, Virginia Commonwealth University, Richmond 23298, USA. Medline UID: 20488795 25. Eberle, M. A. and Kruglyak, L. An analysis of strategies for discovery of single-nucleotide polymorphisms. Genet Epidemiol. 19 Suppl 1:S29-35, 2000. ADDRESS: Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA. Medline UID: 20506558 26. Elston, R. C. and Cordell, H. J. Overview of model-free methods for linkage analysis. Adv Genet. 42:135-50, 2001. ADDRESS: Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44101, USA. Medline UID: 20488790 27. Forrest, R.; Zhou, H.Hickford, J. G. 3'overhangs influence PCR-SSCP patterns. Biotechniques. 29:958-60, 962, 2000. ADDRESS: Lincoln University, Canterbury, New Zealand. Medline UID: 20537024 28. George, A. W.; Visscher, P. M.Haley, C. S. Mapping quantitative trait loci in complex pedigrees: a two-step variance component approach. Genetics. 156:2081-92, 2000. ADDRESS: Roslin Institute, Midlothian EH25 9PS, United Kingdom. andrew.george@bbsrc.ac.uk. Medline UID: 20556169 29. Ghosh, S. and Majumder, P. P. Deciphering the genetic architecture of a multivariate phenotype. Adv Genet. 42:323-47, 2001. ADDRESS: Anthropology and Human Genetics Unit, Indian Statistical Institute, Calcutta. Medline UID: 20488801 30. Goldstein, D. R.; Dudoit, S.Speed, T. P. Power of a score test for quantitative trait linkage analysis of relative pairs. Genet Epidemiol. 19 Suppl 1:S85-91, 2000. ADDRESS: Department of Statistics, University of California, Los Angeles 90095-1554, USA. darlene@stat.ucla.edu. Medline UID: 20506566 31. Gray, I. C.; Campbell, D. A.Spurr, N. K. Single nucleotide polymorphisms as tools in human genetics. Hum Mol Genet. 9:2403-8, 2000. ADDRESS: Department of Biotechnology and Genetics, SmithKline Beecham Pharmaceuticals, New Frontiers Science Park, Third Avenue, Harlow, Essex CM19 5AW, UK. ian_gray-1@sbphrd.com. Medline UID: 20461130 32. Grisel, J. E. Quantitative trait locus analysis. Alcohol Res Health. 24:169-74, 2000. ADDRESS: Department of Psychology, Furman University, Greenville, South Carolina, USA. Medline UID: 21069660 33. Gu, C. and Rao, D. C. Optimum study designs. Adv Genet. 42:439-57, 2001. ADDRESS: Division of Biostatistics, Washington University School of Medicine, St. Louis, Missouri 63110, USA. Medline UID: 20488805 34. Guo, X. and Elston, R. C. One-stage versus two-stage strategies for genome scans. Adv Genet. 42:459-71, 2001. ADDRESS: Department of Medicine and Pediatrics, Spielberg Pediatrics Research Center, Burns and Allen Research Institute, Los Angeles, California 90048, USA. Medline UID: 20488806 35. Hakki, E. E. and Akkaya, M. S. Microsatellite isolation using amplified fragment length polymorphism markers: no cloning, no screening. Mol Ecol. 9:2152-4, 2000. ADDRESS: Middle East Technical University, Department of Chemistry Ankara, TR-06531, Turkey. Medline UID: 20571474 36. Haubold, B. and Hudson, R. R. LIAN 3.0: detecting linkage disequilibrium in multilocus data. Linkage Analysis. Bioinformatics. 16:847-8, 2000. ADDRESS: Max-Planck-Institut fur Chemische Okologie, Carl-Zeiss-Promenade 10, D-07745 Jena, Germany. haubold@ice.mpg.de. Medline UID: 20562979 37. Heber, S.; Hoheisel, J.Vingron, M. Application of bootstrap techniques to physical mapping. Genomics. 69:235-41, 2000. ADDRESS: Theoretical Bioinformatics, Functional Genome Analysis, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, Heidelberg, D-69120, Germany. s.heber@dkfz.de. Medline UID: 20487550 38. Hecksher-Sorensen, J. and Sharpe, J. 3D confocal reconstruction of gene expression in mouse. Mech Dev. 100:59-63, 2001. ADDRESS: Department of Comperative and Developmental Genetics, MRC Human Genetics Unit, Western General Hospital, Crewe Road, EH4 2XU, UK. Medline UID: 20568957 39. Hill, A. A.; Hunter, C. P.; Tsung, B. T.; Tucker-Kellogg, G.Brown, E. L. Genomic analysis of gene expression in C. elegans. Science. 290:809-12, 2000. ADDRESS: Department of Genomics, Genetics Institute, Cambridge, MA 02140, USA. ahill@genetics.com. Medline UID: 20508107 40. Hirschhorn, J. N.; Sklar, P.; Lindblad-Toh, K.; Lim, Y. M.; Ruiz-Gutierrez, M.; Bolk, S.; Langhorst, B.; Schaffner, S.; Winchester, E.Lander, E. S. SBE-TAGS: an array-based method for efficient single-nucleotide polymorphism genotyping. Proc Natl Acad Sci U S A. 97:12164-9, 2000. ADDRESS: Whitehead Institute/MIT Center for Genome Research, One Kendall Square, Building 300, Cambridge, MA 02139, USA. Medline UID: 20504481 41. Hoogendoorn, B.; Norton, N.; Kirov, G.; Williams, N.; Hamshere, M. L.; Spurlock, G.; Austin, J.; Stephens, M. K.; Buckland, P. 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The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 29:102-5, 2001. ADDRESS: Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA. huala@acoma.stanford.edu. Medline UID: 20574763 44. Huhn, M. Maximum likelihood vs. minimum chi-square--a general comparison with applications to the estimation of recombination fractions in two-point linkage analysis. Genome. 43:853-6, 2000. ADDRESS: Institute of Crop Science and Plant Breeding, University Kiel, Germany. mhuehn@plantbreeding.uni-kiel.de. Medline UID: 20532226 45. Iraqi, F. Fine mapping of quantitative trait loci using advanced intercross lines of mice and positional cloning of the corresponding genes. Exp Lung Res. 26:641-9, 2000. ADDRESS: International Livestock Research Institute, P. O. Box 30709, Nairobi, Kenya. f.iraqi@cgiar.org. Medline UID: 21038159 46. 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Power of quantitative trait locus mapping for polygenic binary traits using generalized and regression interval mapping in multi-family half-sib designs. Genet Res. 76:305-17, 2000. ADDRESS: Department of Animal and Poultry Science, University of Guelph, Guelph, ON N1G 2W1, Canada. h.kadarmideen@ed.sac.ac.uk. Medline UID: 21076512 50. Kao, C. H. On the differences between maximum likelihood and regression interval mapping in the analysis of quantitative trait loci. Genetics. 156:855-65, 2000. ADDRESS: Institute of Statistical Science, Academia Sinica, Taipei 11529, Taiwan, Republic of China. chkao@stat.sinica.edu.tw. Medline UID: 20469370 51. Karhu, R.; Ahlstedt-Soini, M.; Bittner, M.; Meltzer, P.; Trent, J. M.Isola, J. J. Chromosome arm-specific multicolor FISH. Genes Chromosomes Cancer. 30:105-9, 2001. ADDRESS: Laboratory of Cancer Genetics, University of Tampere and Tampere University Hospital, Tampere, Finland. ritva.karhu@uta.fi. Medline UID: 20560702 52. 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ADDRESS: Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44109-1998, USA. Medline UID: 21063370 **************************************************************************** ****************** Lyman/Margaret Crittenden Phone: 608-798-0791 8550 Highway 19 e-mail: crittend@itis.com Cross Plains, WI 53528-9300 USA **************************************************************************** ****************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/