From crittend@itis.com Fri Sep 14 12:19:14 2001 Date: Fri, 14 Sep 2001 11:43:34 -0500 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: September, 2001 Mapping References Resent-Date: 14 Sep 2001 16:47:09 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 858 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 9/2001 1. Baldi, P. and Long, A. D. A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes. Bioinformatics. 17:509-19, 2001. ADDRESS: Department of Information and Computer Science, University of California at Irvine, Irvine, CA 92697-3425, USA. pfbaldi@ics.uci.edu. Medline UID: 21288837 2. Baro, J. A.; Carleos, C.; Corral, N.; Lopez, T.Canon, J. Power analysis of QTL detection in half-sib families using selective DNA pooling. Genet Sel Evol. 33:231-47, 2001. ADDRESS: Departamento de Estadistica, Universidad de Oviedo, Facultad de Ciencias, C/Calvo Sotelo, 33007 Oviedo, Asturias, Spain. baro@arrakis.es. Medline UID: 21297205 3. Chicurel, M. Faster, better, cheaper genotyping. Nature. 412:580-2, 2001. Medline UID: 21385618 4. Curtis, D.; North, B. V.Sham, P. C. Use of an artificial neural network to detect association between a disease and multiple marker genotypes. Ann Hum Genet. 65:95-107, 2001. ADDRESS: Joint Academic Department of Psychological Medicine, St Bartholomew's and Royal London School of Medicine and Dentistry, London, UK. dcurtis@hgmp.mrc.ac.uk. Medline UID: 21308412 5. Deng, H. W.; Li, J.Recker, R. R. LOD score exclusion analyses for candidate genes using random population samples. Ann Hum Genet. 65:313-29, 2001. ADDRESS: Osteoporosis Research Center, Creighton University, Omaha, NE 68131, USA. deng@creighton.edu. Medline UID: 21320288 6. Douglas, J. A.; Boehnke, M.; Gillanders, E.; Trent, J. M.Gruber, S. B. Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies. Nat Genet. 28:361-4, 2001. ADDRESS: Department of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA. Medline UID: 21372444 7. Eis, P. S.; Olson, M. C.; Takova, T.; Curtis, M. L.; Olson, S. M.; Vener, T. I.; Ip, H. S.; Vedvik, K. L.; Bartholomay, C. T.; Allawi, H. T.; Ma, W. P.; Hall, J. G.; Morin, M. D.; Rushmore, T. H.; Lyamichev, V. I.Kwiatkowski, R. W. An invasive cleavage assay for direct quantitation of specific RNAs. Nat Biotechnol. 19:673-6, 2001. ADDRESS: Third Wave Technologies, 502 South Rosa Road, Madison, WI 53719-1256, USA. peis@twt.com. Medline UID: 21326436 8. Fauth, C. and Speicher, M. R. Classifying by colors: FISH-based genome analysis. Cytogenet Cell Genet. 93:1-10, 2001. ADDRESS: Institut fur Anthropologie und Humangenetik, Ludwig-Maximilians-Universitat Munchen, Goethestrasse 31, D-80336 Munich, Germany. Medline UID: 21367588 9. Gordon, D.; Heath, S. C.; Liu, X.Ott, J. A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data. Am J Hum Genet. 69:371-80, 2001. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, New York, NY, 10021, USA. gordon@linkage.rockefeller.edu. Medline UID: 21344593 10. Green, E. D. Strategies for the systematic sequencing of complex genomes. Nat Rev Genet. 2:573-83, 2001. ADDRESS: Genome Technology Branch and NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA. egreen@nhgri.nih.gov. Medline UID: 21376527 11. Harley, E.; Bonner, A.Goodman, N. Uniform integration of genome mapping data using intersection graphs. Bioinformatics. 17:487-94, 2001. ADDRESS: Department of Computer Science, University of Toronto, Toronto, Ontario, Canada M5S 1A4. eharley@cs.toronto.edu. Medline UID: 21288835 12. Hayes, B. and Goddard, M. E. The distribution of the effects of genes affecting quantitative traits in livestock. Genet Sel Evol. 33:209-29, 2001. ADDRESS: Institute of Land and Food Resources, University of Melbourne, Parkville, Victoria, 3052, Australia. Ben.Hayes@nre.vic.gov.au. Medline UID: 21297204 13. Hollon, T. Comparing microarray data: What technology is needed? J Natl Cancer Inst. 93:1126-7, 2001. Medline UID: 21374199 14. Jakobsen, I. B.; Saleeba, J. A.; Poidinger, M.Littlejohn, T. G. TreeGeneBrowser: phylogenetic data mining of gene sequences from public databases. Bioinformatics. 17:535-40, 2001. ADDRESS: Australian Genomic Information Centre, University of Sydney, NSW 2006, Australia. Medline UID: 21288841 15. Jiang, R.; Dong, J.; Wang, D.Sun, F. Z. Fine-scale mapping using Hardy-Weinberg disequilibrium. Ann Hum Genet. 65:207-19, 2001. ADDRESS: Department of Mathematical Sciences, Michigan Technological University, Houghton, MI USA. Medline UID: 21320280 16. Jinag, C. J. and Mo, H. D. Distribution of donor genome composition and its application in marker aided backcrossing. Yi Chuan Xue Bao. 28:655-62, 2001. ADDRESS: Laboratory of Quantitative Genetics, Yangzhou University, Yangzhou 225009, China. Medline UID: 21373528 17. Jongeneel, C. V. Searching the expressed sequence tag (EST) databases: panning for genes. Brief Bioinform. 1:76-92, 2000. ADDRESS: Office of Information Technology, Ludwig Institute for Cancer Research and Swiss Institute of Bioinformatics, chemin des Boveresses 155, CH-1066 Epalinges, Switzerland. Victor.Jongeneel@licr.org. Medline UID: 21360613 18. Konig, I. R.; Schafer, H.; Muller, H. H.Ziegler, A. Optimized group sequential study designs for tests of genetic linkage and association in complex diseases. Am J Hum Genet. 69:590-600, 2001. ADDRESS: Center for Methodology and Health Research, Institute of Medical Biometry and Epidemiology, Philipps-University of Marburg, 35033 Marburg, Germany. Medline UID: 21375679 19. Law, A. S. and Archibald, A. L. Farm animal genome databases. Brief Bioinform. 1:151-60, 2000. ADDRESS: Roslin Institute Edinburgh, Midlothian, UK. andy.law@bbsrc.ac.uk. Medline UID: 21357551 20. Pathak, S.; Choi, S. K.; Arnheim, N.Thompson, M. E. Hydroxylated quantum dots as luminescent probes for in situ hybridization. J Am Chem Soc. 123:4103-4, 2001. ADDRESS: Department of Chemistry and Molecular Biology Program, University of Southern California Los Angeles, California 90089, USA. Medline UID: 21350308 21. Reda, D. and Reda, A. C. Redasoft Plasmid 1.1: software for easy, efficient cloning and map drawing. Curr Issues Mol Biol. 2:37-9, 2000. ADDRESS: Redasoft, Toronto, Ontario, Canada. info@redasoft.com. Medline UID: 21364167 22. Rementeria, A.; Gallego, L.; Quindos, G.Garaizar, J. Comparative evaluation of three commercial software packages for analysis of DNA polymorphism patterns. Clin Microbiol Infect. 7:331-6, 2001. ADDRESS: Departamento de Inmunologia, Microbiologia y Parasitologia, Facultad de Farmacia, Universidad del Pais Vasco-EHU, E-01080 Vitoria-Gasteiz, Spain. Medline UID: 21336128 23. White, P. S. and Matise, T. C. Genomic mapping and mapping databases. Methods Biochem Anal. 43:111-53, 2001. ADDRESS: Department of Pediatrics, University of Pennsylvania, Philadelphia, Pennsylvania, USA. Medline UID: 21343621 24. Wilkins Stevens, P.; Hall, J. G.; Lyamichev, V.; Neri, B. P.; Lu, M.; Wang, L.; Smith, L. M.Kelso, D. M. Analysis of single nucleotide polymorphisms with solid phase invasive cleavage reactions. Nucleic Acids Res. 29:E77, 2001. ADDRESS: Department of Biomedical Engineering, Robert R. McCormick School of Engineering and Applied Science, Northwestern University, 2145 Sheridan Road, Evanston, IL 60208-3107, USA. pwilkins@northwestern.edu. Medline UID: 21396447 25. Wolfsberg, T. G. and Landsman, D. Expressed sequence tags (ESTs). Methods Biochem Anal. 43:283-301, 2001. ADDRESS: Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA. Medline UID: 21343627 **************************************************************************** ****************** Lyman/Margaret Crittenden Phone: 608-798-0791 8550 Highway 19 e-mail: crittend@itis.com Cross Plains, WI 53528-9300 USA **************************************************************************** ****************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/