From crittend@itis.com Mon Dec 17 19:57:48 2001 Date: Mon, 17 Dec 2001 14:55:52 -0800 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: December, 2001 mapping references. Resent-Date: 17 Dec 2001 20:54:21 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 860 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 12/01 1. Aach, J. and Church, G. M. Aligning gene expression time series with time warping algorithms. Bioinformatics. 17:495-508, 2001. ADDRESS: Department of Genetics and Lipper Center for Computational Genetics, Harvard Medical School, 200 Longwood Ave, Boston, MA 02115, USA. Medline UID: 21288836 2. Baldi, P. and Long, A. D. A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes. Bioinformatics. 17:509-19, 2001. ADDRESS: Department of Information and Computer Science, University of California at Irvine, Irvine, CA 92697-3425, USA. pfbaldi@ics.uci.edu. Medline UID: 21288837 3. Baro, J. A.; Carleos, C.; Corral, N.; Lopez, T.Canon, J. Power analysis of QTL detection in half-sib families using selective DNA pooling. Genet Sel Evol. 33:231-47, 2001. ADDRESS: Departamento de Estadistica, Universidad de Oviedo, Facultad de Ciencias, C/Calvo Sotelo, 33007 Oviedo, Asturias, Spain. baro@arrakis.es. Medline UID: 21297205 4. Blackshaw, S.; Fraioli, R. E.; Furukawa, T.Cepko, C. L. Comprehensive analysis of photoreceptor gene exoression and the identification of candidate retinal disease genes. Cell. 107:579-589, 2001. Medline UID: 5. Curtis, D.; North, B. V.Sham, P. C. Use of an artificial neural network to detect association between a disease and multiple marker genotypes. Ann Hum Genet. 65:95-107, 2001. ADDRESS: Joint Academic Department of Psychological Medicine, St Bartholomew's and Royal London School of Medicine and Dentistry, London, UK. dcurtis@hgmp.mrc.ac.uk. Medline UID: 21308412 6. Deng, H. W.; Li, J.Recker, R. R. LOD score exclusion analyses for candidate genes using random population samples. Ann Hum Genet. 65:313-29, 2001. ADDRESS: Osteoporosis Research Center, Creighton University, Omaha, NE 68131, USA. deng@creighton.edu. Medline UID: 21320288 7. Douglas, J. A.; Boehnke, M.; Gillanders, E.; Trent, J. M.Gruber, S. B. Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies. Nat Genet. 28:361-4, 2001. ADDRESS: Department of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA. Medline UID: 21372444 8. Gordon, D.; Heath, S. C.; Liu, X.Ott, J. A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data. Am J Hum Genet. 69:371-80, 2001. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, New York, NY, 10021, USA. gordon@linkage.rockefeller.edu. Medline UID: 21344593 9. Green, E. D. Strategies for the systematic sequencing of complex genomes. Nat Rev Genet. 2:573-83, 2001. ADDRESS: Genome Technology Branch and NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA. egreen@nhgri.nih.gov. Medline UID: 21376527 10. Harley, E.; Bonner, A.Goodman, N. Uniform integration of genome mapping data using intersection graphs. Bioinformatics. 17:487-94, 2001. ADDRESS: Department of Computer Science, University of Toronto, Toronto, Ontario, Canada M5S 1A4. eharley@cs.toronto.edu. Medline UID: 21288835 11. Hayes, B. and Goddard, M. E. The distribution of the effects of genes affecting quantitative traits in livestock. Genet Sel Evol. 33:209-29, 2001. ADDRESS: Institute of Land and Food Resources, University of Melbourne, Parkville, Victoria, 3052, Australia. Ben.Hayes@nre.vic.gov.au. Medline UID: 21297204 12. Hollon, T. Comparing microarray data: What technology is needed? J Natl Cancer Inst. 93:1126-7, 2001. Medline UID: 21374199 13. Jiang, R.; Dong, J.; Wang, D.Sun, F. Z. Fine-scale mapping using Hardy-Weinberg disequilibrium. Ann Hum Genet. 65:207-19, 2001. ADDRESS: Department of Mathematical Sciences, Michigan Technological University, Houghton, MI USA. Medline UID: 21320280 14. Jinag, C. J. and Mo, H. D. Distribution of donor genome composition and its application in marker aided backcrossing. Yi Chuan Xue Bao. 28:655-62, 2001. ADDRESS: Laboratory of Quantitative Genetics, Yangzhou University, Yangzhou 225009, China. Medline UID: 21373528 15. Jongeneel, C. V. Searching the expressed sequence tag (EST) databases: panning for genes. Brief Bioinform. 1:76-92, 2000. ADDRESS: Office of Information Technology, Ludwig Institute for Cancer Research and Swiss Institute of Bioinformatics, chemin des Boveresses 155, CH-1066 Epalinges, Switzerland. Victor.Jongeneel@licr.org. Medline UID: 21360613 16. Konig, I. R.; Schafer, H.; Muller, H. H.Ziegler, A. Optimized group sequential study designs for tests of genetic linkage and association in complex diseases. Am J Hum Genet. 69:590-600, 2001. ADDRESS: Center for Methodology and Health Research, Institute of Medical Biometry and Epidemiology, Philipps-University of Marburg, 35033 Marburg, Germany. Medline UID: 21375679 17. Law, A. S. and Archibald, A. L. Farm animal genome databases. Brief Bioinform. 1:151-60, 2000. ADDRESS: Roslin Institute Edinburgh, Midlothian, UK. andy.law@bbsrc.ac.uk. Medline UID: 21357551 18. Le Hellard, S.; Semple, C. A.; Morris, S. W.; Porteous, D. J.Evans, K. L. Physical mapping: integrating computational and molecular genetic data. Ann Hum Genet. 65:221-8, 2001. ADDRESS: Medical Genetics Section, Molecular Medicine Centre, Western General Hospital, Edinburgh, UK. S.LeHellard@ed.ac.uk. Medline UID: 21320281 19. Reda, D. and Reda, A. C. Redasoft Plasmid 1.1: software for easy, efficient cloning and map drawing. Curr Issues Mol Biol. 2:37-9, 2000. ADDRESS: Redasoft, Toronto, Ontario, Canada. info@redasoft.com. Medline UID: 21364167 20. Schmid, M.; Nanda, I.; Guttenbach, M.; Steinlein, C.; Hoehn, M.; Schartl, M.; Haaf , T.; Weigend, S.; Fries, R.; Buerstedde, J. M.; Wimmers, K.; Burt, D. W.; Smith, J.; A'Hara, S.; Law, A.; Griffin, D. K.; Bumstead, N.; Kaufman, J.; Thomson, P. A.; Burke, T.; Groenen, M. A.; Crooijmans, R. P.; Vignal, A.; Fillon, V.; Morisson, M.; Pitel, F.; Tixier-Boichard, M.; Ladjali-Mohammedi, K.; Hillel, J.; Maki-Tanila, A.; Cheng, H. H. Delany M. E.; Burnside, J.Mizuno, S. First report on chicken genes and chronosomes 2000. Cytogenet Cell Genet. 90:169-218, 2000. Medline UID: 21. Sklar, P. The genomic approach to candidate genes. Harv Rev Psychiatry. 9:197-207, 2001. ADDRESS: Whitehead Institute Center for Genome Research, Cambridge, MA 02139, USA. Medline UID: 21303344 22. Werner, T. Identification and functional modelling of DNA sequence elements of transcription. Brief Bioinform. 1:372-80, 2000. ADDRESS: Institute of Experimental Genetics, GSF-National Research Center for Environment and Health, Neuherberg, Germany. werner@gsf.de. Medline UID: 21357579 23. White, P. S. and Matise, T. C. Genomic mapping and mapping databases. Methods Biochem Anal. 43:111-53, 2001. ADDRESS: Department of Pediatrics, University of Pennsylvania, Philadelphia, Pennsylvania, USA. Medline UID: 21343621 24. Wolfsberg, T. G. and Landsman, D. Expressed sequence tags (ESTs). Methods Biochem Anal. 43:283-301, 2001. ADDRESS: Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA. Medline UID: 21343627 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/