From crittend@itis.com Wed Jan 23 17:55:53 2002 Date: Sat, 19 Jan 2002 10:11:11 -0800 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: Janauary, 2002 Mapping References Resent-Date: 19 Jan 2002 16:15:31 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 855 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 1/02 1. Altmuller, J.; Palmer, L. J.; Fischer, G.; Scherb, H.Wjst, M. Genomewide scans of complex human diseases: true linkage is hard to find. Am J Hum Genet. 69:936-50, 2001. ADDRESS: Institute of Epidemiology, GSF [corrected] National Research Center for Environment and Health, Neuherberg, Germany. altmueller@gsf.de. Medline UID: 21473742 2. Camargo, A. A.; Samaia, H. P.; Dias-Neto, E.; Simao, D. F.; Migotto, I. A.; Briones, M. R.; Costa, F. F.; Nagai, M. A.; Verjovski-Almeida, S.; Zago, M. A.; Andrade, L. E.; Carrer, H.; El-Dorry, H. F.; Espreafico, E. M.; Habr-Gama, A.; Giannella-Neto, D.; Goldman, G. H.; Gruber, A.; Hackel, C.; Kimura, E. T.; Maciel, R. M.; Marie, S. K.; Martins, E. A.; Nobrega, M. P.; Paco-Larson, M. L.; Pardini, M. I.; Pereira, G. G.; Pesquero, J. B.; Rodrigues, V.; Rogatto, S. R.; da Silva, I. D.; Sogayar, M. C.; Sonati, M. F.; Tajara, E. H.; Valentini, S. R.; Alberto, F. L.; Amaral, M. E.; Aneas, I.; Arnaldi, L. A.; de Assis, A. M.; Bengtson, M. H.; Bergamo, N. A.; Bombonato, V.; de Camargo, M. E.; Canevari, R. A.; Carraro, D. M.; Cerutti, J. M.; Correa, M. L.; Correa, R. F.; Costa, M. C.; Curcio, C.; Hokama, P. O.; Ferreira, A. J.; Furuzawa, G. K.; Gushiken, T.; Ho, P. L.; Kimura, E.; Krieger, J. E.; Leite, L. C.; Majumder, P.; Marins, M.; Marques, E. R.; Melo, A. S.; Melo, M.; Mestriner, C. A.; Miracca, E. C.; Miranda, D. C.; Nascimento, A. L.; Nobrega, F. G.; Ojopi, E. P.; Pandolfi, J. R.; Pessoa, L. G.; Prevedel, A. C.; Rahal, P.; Rainho, C. A.; Reis, E. M.; Ribeiro, M. L.; da Ros, N.; de Sa, R. G.; Sales, M. M.; Sant'anna, S. C.; dos Santos, M. L.; da Silva, A. M.; da Silva, N. P.; Silva, W. A. Jr; da Silveira, R. A.; Sousa, J. F.; Stecconi, D.; Tsukumo, F.; Valente, V.; Soares, F.; Moreira, E. S.; Nunes, D. N.; Correa, R. G.; Zalcberg, H.; Carvalho, A. F.; Reis, L. F.; Brentani, R. R.; Simpson, A. J.de Souza, S. J. The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome. Proc Natl Acad Sci U S A. 98:12103-8, 2001. ADDRESS: Ludwig Institute for Cancer Research, 01509-010, Sao Paulo, Brazil. Medline UID: 21477436 3. Cheverud, J. M. A simple correction for multiple comparisons in interval mapping genome scans. Heredity. 87:52-8, 2001. ADDRESS: Department of Anatomy & Neurobiology, Washington University School of Medicine, 660 S. Euclid Ave., St. Louis, MO, 63110, USA. cheverud@pcg.wustl.edu. Medline UID: 21536777 4. Clarke, L. A.; Rebelo, C. S.; Goncalves, J.; Boavida, M. G.Jordan, P. PCR amplification introduces errors into mononucleotide and dinucleotide repeat sequences. Mol Pathol. 54:351-3, 2001. ADDRESS: Centro de Genetica Humana, Instituto Nacional de Saude Dr. Ricardo Jorge, Avenida Padre Cruz, 1649-016 Lisboa, Portugal. Medline UID: 21461140 5. Cutler, D. J.; Zwick, M. E.; Carrasquillo, M. M.; Yohn, C. T.; Tobin, K. P.; Kashuk, C.; Mathews, D. J.; Shah, N. A.; Eichler, E. E.; Warrington, J. A.Chakravarti, A. High-throughput variation detection and genotyping using microarrays. Genome Res. 11:1913-25, 2001. ADDRESS: McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. dcutler@jhmi.edu. Medline UID: 21549090 6. DelRio-LaFreniere, S. A. and McGlennen, R. C. Simultaneous allele-specific amplification: a strategy using modified primer-template mismatches for SNP detection--application to prothrombin 20210A (factor II) and factor V Leiden (1691A) gene mutations. Mol Diagn. 6:201-9, 2001. ADDRESS: University of Minnesota, Minneapolis, MN, USA. Medline UID: 21455577 7. Goldstein, D. B. Islands of linkage disequilibrium. Nat Genet. 29:109-11, 2001. Medline UID: 21470342 8. Goring, H. H.; Terwilliger, J. D.Blangero, J. Large upward bias in estimation of locus-specific effects from genomewide scans. Am J Hum Genet. 69:1357-69, 2001. ADDRESS: Department of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX 78245-0549, USA. hgoring@darwin.sfbr.org. Medline UID: 21559907 9. Greenberg, D. A. Microarrays, markers of disease, and the myth of "nonhypothesis-driven" research. Ann Neurol. 50:695, 2001. Medline UID: 21596999 10. Ioannidis, J. P.; Ntzani, E. E.; Trikalinos, T. A.Contopoulos-Ioannidis, D. G. Replication validity of genetic association studies. Nat Genet. 29:306-9, 2001. ADDRESS: Clinical and Molecular Epidemiology Unit, Department of Hygiene and Epidemiology, University of Ioannina School of Medicine, Ioannina 45110, Greece. jioannid@cc.uoi.gr. Medline UID: 21547504 11. Kato, M.; Tsunoda, T.Takagi, T. Inferring genetic networks from DNA microarray data by multiple regression analysis. Genome Inform Ser Workshop Genome Inform. 11:118-28, 2000. ADDRESS: Department of Physics, Graduate School of Science, University of Tokyo, 7-3-1 Hongo, Bunkyou-ku, Tokyo 113-0033, Japan. mkato@ims.u-tokyo.ac.jp. Medline UID: 21557039 12. Kishino, H. and Waddell, P. J. Correspondence analysis of genes and tissue types and finding genetic links from microarray data. Genome Inform Ser Workshop Genome Inform. 11:83-95, 2000. ADDRESS: Graduate School of Agriculture and Life Sciences, University of Tokyo, 1-1-1 Yayoi Bunkyo-ku, Tokyo 113-8657, Japan. kishino@wheat.ab.a.u-tokyo.ac.jp. Medline UID: 21557036 13. Kozubek, M.; Kozubek, S.; Lukasova, E.; Bartova, E.; Skalnikova, M.; Matula, P.; Matula, P.; Jirsova, P.; Cafourkova, A.Koutna, I. Combined confocal and wide-field high-resolution cytometry of fluorescent in situ hybridization-stained cells. Cytometry. 45:1-12, 2001. ADDRESS: Faculty of Informatics, Masaryk University, Brno, Czech Republic. kozubek@fi.muni.cz. Medline UID: 21481679 14. Kriegsmann, J.; Muller-Ladner, U.; Sprott, H.; Brauer, R.; Petrow, P. K.; Otto, M.; Hansen, T.; Gay, R. E.Gay, S. Detection of mRNA by non-radioactive direct primed in situ reverse transcription. Histochem Cell Biol. 116:199-204, 2001. ADDRESS: Institute of Pathology, Johannes Gutenberg University, Langenbeckstrasse 1, 55101 Mainz, Germany. f0x113@web.de. Medline UID: 21541339 15. Kwitek, A. E.; Tonellato, P. J.; Chen, D.; Gullings-Handley, J.; Cheng, Y. S.; Twigger, S.; Scheetz, T. E.; Casavant, T. L.; Stoll, M.; Nobrega, M. A.; Shiozawa, M.; Soares, M. B.; Sheffield, V. C.Jacob, H. J. Automated construction of high-density comparative maps between rat, human, and mouse. Genome Res. 11:1935-43, 2001. ADDRESS: Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA. ablack@mcw.edu. Medline UID: 21549092 16. Kwok, P. Y. Genomics. Genetic association by whole-genome analysis? Science. 294:1669-70, 2001. ADDRESS: Department of Genetics and the Division of Dermatology, Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA. kwok@genetics.wustl.edu. Medline UID: 21578269 17. Methods for genotyping single nucleotide polymorphisms. Annu Rev Genomics Hum Genet. 2:235-58, 2001. ADDRESS: Washington University School of Medicine, St. Louis, Missouri 63110, USA. kwok@genetics.wustl.edu. Medline UID: 21557855 18. Lisacek, F. C.; Traini, M. D.; Sexton, D.; Harry, J. L.Wilkins, M. R. Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting. Proteomics. 1:186-93, 2001. ADDRESS: Proteome Systems Limited, Sydney, NSW. lisacek@genetique.uvsq.fr. Medline UID: 21537926 19. Liu, J. S.; Sabatti, C.; Teng, J.; Keats, B. J.Risch, N. Bayesian analysis of haplotypes for linkage disequilibrium mapping. Genome Res. 11:1716-24, 2001. ADDRESS: Department of Statistics, Harvard University, Cambridge, Massachusetts 02138, USA. jliu@stat.harvard.edu. Medline UID: 21475675 20. Mackay, T. F. The genetic architecture of quantitative traits. Annu Rev Genet. 35:303-39, 2001. ADDRESS: Department of Genetics, North Carolina State University, Raleigh, Box 7614, North Carolina 27695, USA. trudy_mackay@ncsu.edu. Medline UID: 21556877 21. Morroll, S.; Goodchild, M.; Salmon, N.; Copeland, N. G.; Gilbert, D. J.; Jenkins, N. A.; Bumstead, N.Boyd, Y. The genes encoding E-selectin (SELE) and lymphotactin (SCYC1) lie on separate chicken chromosomes although they are closely linked in human and mouse. Immunogenetics. 53:477-82, 2001. ADDRESS: Division of Molecular Biology, Institute for Animal Health, Compton, Newbury, Berkshire, RG20 7NN, UK. Medline UID: 21541396 22. Nishikawa, T.; Murakami, K.; Harada, N.; Ota, T.; Sugiyama, T.; Nagai, K.; Irie, R.; Matui, H.; Suwa, M.Isogai, T. An integrated analysis and database system for full-length cDNA. Genome Inform Ser Workshop Genome Inform. 11:12-23, 2000. ADDRESS: Biosystems Research Department, Central Research Laboratory, Hitachi, Ltd. 1-280 Higashi-Koigakubo, Kokubunji-shi, Tokyo 185-8601, Japan. nishikawa@crl.hitachi.co.jp. Medline UID: 21557029 23. Oliver, J. L.; Bernaola-Galvan, P.; Carpena, P.Roman-Roldan, R. Isochore chromosome maps of eukaryotic genomes. Gene. 276:47-56, 2001. ADDRESS: Departamento de Genetica, Instituto de Biotecnologia, Universidad de Granada, E-18071, Granada, Spain. oliver@ugr.es. Medline UID: 21475650 24. Parson, W. and Steinlechner, M. Efficient DNA database laboratory strategy for high through-put STR typing of reference samples. Forensic Sci Int. 122:1-6, 2001. ADDRESS: Institute of Legal Medicine, University of Innsbruck, Muellerstrasse 44, A-6020, Innsbruck, Austria. walther.parson@uibk.ac.at. Medline UID: 21472237 25. Perez-Enciso, M.; Fernando, R. L.; Bidanel, J. P.Le Roy, P. Quantitative trait locus analysis in crosses between outbred lines with dominance and inbreeding. Genetics. 159:413-22, 2001. ADDRESS: INRA, Station d'Amelioration Genetique des Animaux, BP 27, 31326 Castanet-Tolosan, France. mperez@toulouse.inra.fr. Medline UID: 21444855 26. Pong-Wong, R.; George, A. W.; Woolliams, J. A.Haley, C. S. A simple and rapid method for calculating identity-by-descent matrices using multiple markers. Genet Sel Evol. 33:453-71, 2001. ADDRESS: Roslin Institute (Edinburgh), Roslin, Midlothian EH25 9PS, UK. ricardo.pong-wong@bbsrc.ac.uk. Medline UID: 21570086 27. Qi, X.; Bakht, S.; Devos, K. M.; Gale, M. D.Osbourn, A. L-RCA (ligation-rolling circle amplification): a general method for genotyping of single nucleotide polymorphisms (SNPs). Nucleic Acids Res. 29:E116, 2001. ADDRESS: Sainsbury Laboratory and John Innes Centre, Norwich Research Park, Colney, Norwich NR4 7UH, UK. xiaquan.qi@bbsrc.ac.uk. Medline UID: 21570562 28. Rogers, J. and Bradley, A. The mouse genome sequence: status and prospects. Genomics. 77:117-8, 2001. Medline UID: 21481892 29. Roy, L.; Durand, V.; Delbos, M.; Sorokine-Durm, I.; Soussaline, F.Voisin, P. A new image analysis system for biological dosimetry by fluorescent in situ hybridization. Step 1: metaphase finder and automatic metaphase acquisition validation. J Radiat Res (Tokyo). 42:165-77, 2001. ADDRESS: Institut de Protection et de Surete Nucleaire, Departement de Protection de la sante de I'Homme et de Dosimetrie, IPSN, Fontenay-aux-Roses, France. Laurence.roy@IPSN.fr. Medline UID: 21485377 30. Sakakibara, Y. and Suyama, A. Intelligent DNA chips: logical operation of gene expression profiles on DNA computers. Genome Inform Ser Workshop Genome Inform. 11:33-42, 2000. ADDRESS: Department of Information Sciences, Tokyo Denki University, Hatoyama, Hiki-gun, Saitama 350-0394, Japan. yasu@j.dendai.ac.jp. Medline UID: 21557031 31. Sen, S. and Churchill, G. A. A statistical framework for quantitative trait mapping. Genetics. 159:371-87, 2001. ADDRESS: The Jackson Laboratory, Bar Harbor, Maine 04609, USA. Medline UID: 21444852 32. Shi, S. J.; Scheffer, A.; Bjeldanes, E.; Reynolds, M. A.Arnold, L. J. DNA exhibits multi-stranded binding recognition on glass microarrays. Nucleic Acids Res. 29:4251-6, 2001. ADDRESS: Incyte Genomics, Microarray Division, 6519 Dumbarton Circle, Fremont, CA 94555, USA. Medline UID: 21486815 33. Sobel, E.; Sengul, H.Weeks, D. E. Multipoint estimation of identity-by-descent probabilities at arbitrary positions among marker loci on general pedigrees. Hum Hered. 52:121-31, 2001. ADDRESS: Department of Human Genetics, University of California, Los Angeles, CA, USA. Medline UID: 21472275 34. Waddell, P. J. and Kishino, H. Cluster inference methods and graphical models evaluated on NCI60 microarray gene expression data. Genome Inform Ser Workshop Genome Inform. 11:129-40, 2000. ADDRESS: Chugai Research Institute for Molecular Medicine, 153-2 Nagai Niihari Ibaraki 300-4101, Japan. waddell@cimmed.com. Medline UID: 21557040 35. Wall, J. D. Insights from linked single nucleotide polymorphisms: what we can learn from linkage disequilibrium. Curr Opin Genet Dev. 11:647-51, 2001. ADDRESS: Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA. jwall@oeb.harvard.edu. Medline UID: 21538567 36. Weng, J.; Lehto, M.; Berglund, A.Groop, L. C. An automated fluorescent single strand conformation polymorphism technique for high throughput mutation screening. Chin Med J (Engl). 114:1147-50, 2001. ADDRESS: Department of Endocrinology, First Affiliated Hospital of Sun Yet-San University of Medical Sciences, Guangzhou 510080, China. gzwengjp@public.guangzhou.gd.cn. Medline UID: 21586912 37. Zhang, W.; Collins, A.Morton, N. E. Combination of linkage evidence in complex inheritance. Hum Hered. 52:132-5, 2001. ADDRESS: Human Genetics Research Division, University of Southampton, Southampton General Hospital, Duthie Building, Tremona Road, Southampton SO16 6YD, UK. Medline UID: 21472276 38. Zhang, W.; Tapper, W.; Collins, A.; Jacobs, K. B.; Elston, R. C.Morton, N. E. A tournament of linkage tests in complex inheritance. Hum Hered. 52:140-8, 2001. ADDRESS: Human Genetics Research Division, University of Southampton, Southampton General Hospital, Duthie Building, Tremona Road, Southampton SO16 6YD, UK. wz@soton.ac.uk. Medline UID: 21472278 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/