From crittend@itis.com Mon Apr 22 20:12:40 2002 Date: Sun, 21 Apr 2002 15:16:52 -0700 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: April, 2002 Mapping References Resent-Date: 21 Apr 2002 20:22:01 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 860 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ This search of PubMed came up with a very large number of references from a Supplement to Volume 21 of Genetic Epidemiology. I selected 12 interesting titles as samples of the papers. Those interested in mapping QTLs may be interested in looking up this supplement. JOURNALS REFES. (MAPPING METHODS AND REVIEWS) NLM 4/02 1. Abecasis, G. R.; Cardon, L. R.; Cookson, W. O.; Sham, P. C.Cherny, S. S. Association analysis in a variance components framework. Genet Epidemiol. 21 Suppl 1:S341-6, 2001. ADDRESS: Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK. Medline UID: 21651798 2. Abkevich, V.; Camp, N. J.; Gutin, A.; Farnham, J. M.; Cannon-Albright, L.Thomas, A. A robust multipoint linkage statistic (tlod) for mapping complex trait loci. Genet Epidemiol. 21 Suppl 1:S492-7, 2001. ADDRESS: Myriad Genetics, Inc., Salt Lake City, UT 84108, USA. Medline UID: 21651825 3. Abreu, P. C.; Hodge, S. E.Greenberg, D. A. Quantification of type I error probabilities for heterogeneity LOD scores. Genet Epidemiol. 22:156-69, 2002. ADDRESS: Department of Biostatistics, Mailman School of Public Health, Columbia University, New York, New York, USA. Medline UID: 21648509 4. Allison, D. B.; Fernandez, J. R.; Heo, M.; Zhu, S.; Etzel, C.; Beasley, T. M.Amos, C. I. Bias in estimates of quantitative-trait-locus effect in genome scans: demonstration of the phenomenon and a method-of-moments procedure for reducing bias. Am J Hum Genet. 70:575-85, 2002. ADDRESS: Department of Biostatistics and Center for Research on Clinical Nutrition, University of Alabama at Birmingham, 35294-0022, USA. Dallison@ms.soph.uab.edu. Medline UID: 21832514 5. Atkinson, E. J.; Hall, D.de Andrade, M. A comparison of software packages that assess linkage using a variance components approach. Genet Epidemiol. 21 Suppl 1:S81-8, 2001. ADDRESS: Department of Health Sciences Research, Section of Biostatistics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA. Medline UID: 21651752 6. Bailey-Wilson, J. E. Introduction: association and transmission/disequilibrium test analyses of discrete traits in the GAW12 simulated data. Genet Epidemiol. 21 Suppl 1:S376-7, 2001. ADDRESS: National Human Genome Research Institute, National Institutes of Health, Baltimore, Maryland, USA.. Medline UID: 21651804 7. Barmada, M. M. and O'Connell, J. R. Model-free linkage analysis: performance under real-world conditions. Genet Epidemiol. 21 Suppl 1:S498-503, 2001. ADDRESS: Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Crabtree A300, 130 Desoto Street, Pittsburgh, PA 15261, USA. Medline UID: 21651826 8. Beckmann, L.; Fischer, C.; Deck, K. G.; Nolte, I. M.; te Meerman, G.Chang-Claude, J. Exploring haplotype sharing methods in general and isolated populations to detect gene(s) of a complex genetic trait. Genet Epidemiol. 21 Suppl 1:S554-9, 2001. ADDRESS: German Cancer Research Center DKFZ, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany. Medline UID: 21651836 9. Bertram, L.; Hayward, B.; Lake, S. L.; Falls, K.; Van Erdewegh, P.Blacker, D. Family-based tests of association in the presence and absence of known linkage. Genet Epidemiol. 21 Suppl 1:S292-7, 2001. ADDRESS: Genetics and Aging Unit, Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts, USA. Medline UID: 21651789 10. Biernacka, J.; Lewinger, J. P.; Chan, V.Bull, S. B. Does simultaneous consideration of multiple regions improve disease gene localization? Genet Epidemiol. 21 Suppl 1:S504-9, 2001. ADDRESS: Department of Public Health Sciences, University of Toronto, Samuel Lunenfeld Research Institute, Toronto, Ontario, Canada. Medline UID: 21651827 11. Bourgain, C.; Genin, E.; Margaritte-Jeannin, P.Clerget-Darpoux, F. Maximum identity length contrast: a powerful method for susceptibility gene detection in isolated populations. Genet Epidemiol. 21 Suppl 1:S560-4, 2001. ADDRESS: Genetic Epidemiology Unit, INSERM U535, Batiment Gregory Pincus, 80 Avenue du General Leclerc 94276 Le Kremlin-Bicetre, France. Medline UID: 21651837 12. Bull, S. B.; Greenwood, C. M.; Mirea, L.Morgan, K. Regression models for allele sharing: analysis of accumulating data in affected sib pair studies. Stat Med. 21:431-44, 2002. ADDRESS: Samuel Lunenfeld Research Institute of Mount Sinai Hospital and Department of Public Health Sciences, University of Toronto Suite 850, 600 University Avenue, Toronto, Ontario M5G 1X5, Canada. bull@mshri.on.ca. Medline UID: 21672032 13. Camp, N. J.; Gutin, A.; Abkevich, V.; Farnham, J. M.; Cannon-Albright, L.Thomas, A. A new nonparametric linkage statistic for mapping both qualitative and quantitative trait loci. Genet Epidemiol. 21 Suppl 1:S461-6, 2001. ADDRESS: University of Utah, Myriad Genetics Inc., Salt Lake City, Utah, USA. Medline UID: 21651820 14. Chiu, Y. F.; Addington, A. M.; Beaty, T. H.; Klein, A. P.Liang, K. Y. Multipoint linkage analysis under heterogeneity: incorporation of parametric and nonparametric approaches. Genet Epidemiol. 21 Suppl 1:S55-60, 2001. ADDRESS: Department of Biostatistics, School of Public Health, University of North Carolina, CB #7295, Chapel Hill, NC 27599-7295, USA. Medline UID: 21651748 15. Chowdhary, B. P. and Raudsepp, T. Chromosome painting in farm, pet and wild animal species. Methods Cell Sci. 23:37-55, 2001. ADDRESS: Department of Veterinary Anatomy and Public Health, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843-4458, USA. bchowdhary@cvm.tamu.edu. Medline UID: 21606280 16. Davis, C. C.; Brown, W. M.; Lange, E. M.; Rich, S. S.Langefeld, C. D. Nonparametric linkage regression. II: Identification of influential pedigrees in tests for linkage. Genet Epidemiol. 21 Suppl 1:S123-9, 2001. ADDRESS: Section on Biostatistics, Department of Public Health Sciences, Wake Forest Univ. School of Medicine, Med. Ctr. Blvd., Winston-Salem, NC 27157-1063, USA. Medline UID: 21651759 17. Durretta, R. T.; Chen, K-Y.Tanksley, S. D. A simple formula useful for positional cloning. Genetics. 160:353-355, 2002. ADDRESS: Steven D. Tanksley, 252 Emerson Hall, Cornell University, Ithaca, NY 14853-1902. , sdt4@cornell.edu. Medline UID: 18. Dyer, T. D.; Blangero, J.; Williams, J. T.; Goring, H. H.Mahaney, M. C. The effect of pedigree complexity on quantitative trait linkage analysis. Genet Epidemiol. 21 Suppl 1:S236-43, 2001. ADDRESS: Department of Genetics, Southwest Foundation for Biomedical Research, 7620 NW Loop 410, P.O. Box 760549, San Antonio, TX 78245-0549, USA. Medline UID: 21651779 19. Falk, C. T. Locus ordering based on crossover information in family haplotypes: application of a "minimum break" algorithm. Genet Epidemiol. 21 Suppl 1:S565-70, 2001. ADDRESS: New York Blood Center, 310 E. 67th St., New York, NY 10021, USA. Medline UID: 21651838 20. Genin, E. Selection of single nucleotide polymorphisms for association studies in candidate genes. Genet Epidemiol. 21 Suppl 1:S614-9, 2001. ADDRESS: INSERM U535, Batiment Gregory Pincus, 80 rue du General Leclerc, 94 276 Le Kremlin-Bicetre. Medline UID: 21651847 21. Genin, E.; Todorov, A. A.Clerget-Darpoux, F. Properties of the transmission-disequilibrium test in the presence of inbreeding. Genet Epidemiol. 22:116-27, 2002. ADDRESS: INSERM U535, Le Kremlin Bicetre, France. genin@kb.inserm.fr. Medline UID: 21648506 22. Goldin, L. R. Introduction: linkage analysis of quantitative traits. Genet Epidemiol. 21 Suppl 1:S459-60, 2001. ADDRESS: Genetic Epidemiology Branch, D ivision of Cancer Epidemiology and Genetics, National Cancer Institute, 6120 Executive Blvd, Rm 7008, MSC 7236, Bethesda, MD 20892-7236, USA. Medline UID: 21651819 23. Guo, X.; Lin, Y. C.; Wang, Y.; Cheng, L. S.Yang, H. Assessing the effect of sampling strategies on the power of linkage analysis to identify pathway-specific loci underlying a complex disease. Genet Epidemiol. 21 Suppl 1:S754-9, 2001. ADDRESS: Division of Medical Genetics, Cedars-Sinai Medical Center, UCLA School of Medicine, Los Angeles, California, USA. Medline UID: 21651870 24. Heard-Costa, N. L.; Demissie, S.; DeStefano, A. L.; Knowlton, B. A.; Maher, N. E.; Myers, R. H.; Volcjak, J. S.; Wilk, J. B.Cupples, L. A. Influence of marker heterozygosity and genetic heterogeneity on fine mapping. Genet Epidemiol. 21 Suppl 1:S467-72, 2001. ADDRESS: Neurology Department, Boston University School of Medicine, 715 Albany Street, Boston, MA 02145, USA. Medline UID: 21651821 25. Hinrichs, A. and Reich, T. Markov chain Monte Carlo linkage analysis of complex quantitative phenotypes. Genet Epidemiol. 21 Suppl 1:S662-7, 2001. ADDRESS: Department of Psychiatry, Washington University School of Medicine, St. Louis, Missouri, USA. Medline UID: 21651856 26. Houwing-Duistermaat, J. J. and Elston, R. C. Linkage disequilibrium mapping of complex genetic diseases using multiallelic markers. Genet Epidemiol. 21 Suppl 1:S576-81, 2001. ADDRESS: Department of Epidemiology and Biostatistics, Erasmus Medical Center Rotterdam, The Netherlands. Medline UID: 21651840 27. Kao, C-H. and Zengb, Z-B. Modeling epistasis of quantitative trait loci using Cockerhams's model. Genetics. 160:1243-1261, 2002. ADDRESS: Chen-Hung Kao, Acadamia Sinica, Taipei 11529, Taiwan, Republic of China. chkao@stat.sinica.edu.tw. Medline UID: 28. Kraft, P. A robust score test for linkage disequilibrium in general pedigrees. Genet Epidemiol. 21 Suppl 1:S447-52, 2001. ADDRESS: Department of Preventive Medicine, University of Southern California, 1540 Alcazar, CHP 218 MC 9010, Los Angeles, CA 90089-9010, USA. Medline UID: 21651817 29. Lavania, U. C. High resolution FISH to delineate contiguous and small DNA sequences. Methods Cell Sci. 23:149-54, 2001. ADDRESS: Cytogenetics Division, Central Institute of Medicinal and Aromatic Plants, Lucknow - 226 015, India. lavania@satyam.net.in. Medline UID: 21606289 30. Li, J.; Wang, D.; Dong, J.; Jiang, R.; Zhang, K.; Zhang, S.; Zhao, H.Sun, F. The power of transmission disequilibrium tests for quantitative traits. Genet Epidemiol. 21 Suppl 1:S632-7, 2001. ADDRESS: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut, USA. Medline UID: 21651850 31. Li, X.; Rao, S.; Elston, R. C.; Olson, J. M.; Moser, K. L.; Zhang, T.Guo, Z. Locating the genes underlying a simulated complex disease by discriminant analysis. Genet Epidemiol. 21 Suppl 1:S516-21, 2001. ADDRESS: Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio, USA. Medline UID: 21651829 32. Loesgen, S.; Dempfle, A.; Golla, A.Bickeboller, H. Weighting schemes in pooled linkage analysis. Genet Epidemiol. 21 Suppl 1:S142-7, 2001. ADDRESS: Institute of Epidemiology, GSF-National Research Center for Environment and Health, Ingolstadter Landstr. 1, 85764 Neuherberg, Germany. Medline UID: 21651762 33. Majewski, J. To type or not to type: the use of unaffected siblings in nonparametric linkage analysis. Genet Epidemiol. 21 Suppl 1:S522-7, 2001. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, Box 192, 1230 York Ave., New York, NY 10021, USA. Medline UID: 21651830 34. Maniatis, N.; Collins, A.; Xu, C. F.; McCarthy, L. C.; Hewett, D. R.; Tapper, W.; Ennis, S.; Ke, X.Morton, N. E. The first linkage disequilibrium (LD) maps: delineation of hot and cold blocks by diplotype analysis. Proc Natl Acad Sci U S A. 99:2228-33, 2002. ADDRESS: Human Genetics Division, University of Southampton, Southampton General Hospital, Southampton SO16 6YD, United Kingdom. Medline UID: 21843866 35. McClintick, J.; Koller, D. L.; Pankratz, N.; Kirkwood, S. C.; Naughton, B.Foroud, T. Parametric linkage analysis and disequilibrium methods to identify loci for complex disease. Genet Epidemiol. 21 Suppl 1:S528-33, 2001. ADDRESS: Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana, USA. Medline UID: 21651831 36. Meng, Z.; Zaykin, D. V.; Karnoub, M. C.; Sreekumar, G. P.; St Jean, P. L.Ehm, M. G. Identifying susceptibility genes using linkage and linkage disequilibrium analysis in large pedigrees. Genet Epidemiol. 21 Suppl 1:S453-8, 2001. ADDRESS: Bioinformatics Research Center, North Carolina State University, Raleigh, North Carolina, USA. Medline UID: 21651818 37. Neuman, R. J.; Bierut, L. J.; Rasmussen, E.; Saccone, N. L.; Rice, J. P.; Corbett, J.; Sun, L.Liu, K. Y. A clustering approach for localizing disease susceptibility loci. Genet Epidemiol. 21 Suppl 1:S534-9, 2001. ADDRESS: Department of Psychiatry, Washington University, St. Louis, Missouri, USA. Medline UID: 21651832 38. Nielsen, D. M. and Zaykin, D. Association mapping: where we've been, where we're going. Expert Rev Mol Diagn. 1:334-42, 2001. ADDRESS: North Carolina State University, Program in Statistical Genetics, Department of Statistics, Raleigh, NC 27695-7566, USA. dahlia@statgen.ncsu.edu. Medline UID: 21899873 39. Prince, J. A. and Brookes, A. J. Towards high-throughput genotyping of SNPs by dynamic allele-specific hybridization. Expert Rev Mol Diagn. 1:352-8, 2001. ADDRESS: Center for Genomics Research, Karolinska Institute, Theorells vag 3, S-171 77, Stockholm, Sweden. Jonathan.Prince@cgb.ki.se. Medline UID: 21899875 40. Qian, D. and Thomas, D. C. Genome scan of complex traits by haplotype sharing correlation. Genet Epidemiol. 21 Suppl 1:S582-7, 2001. ADDRESS: Department of Preventive Medicine, University of Southern California, 1540 Alcazar Street, CHP-220, Los Angeles, CA 90089, USA. Medline UID: 21651841 41. Saunders, C. L.; Crockford, G. P.; Bishop, D. T.Barrett, J. H. Using single nucleotide polymorphisms to investigate association between a candidate gene and disease. Genet Epidemiol. 21 Suppl 1:S415-20, 2001. ADDRESS: Genetic Epidemiology Division, Imperial Cancer Research Fund Clinical Centre in Leeds, St. James' University Hospital, Leeds, United Kingdom. Medline UID: 21651811 42. Sharma, A. K. and Sharma, A. Chromosome painting - principles, strategies and scope. Methods Cell Sci. 23:1-5, 2001. ADDRESS: Centre for Advanced Study in Cell and Chromosome Research, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Calcutta 700 019, India. nuclaks@cal2.vsnl.net.in. Medline UID: 21606273 43. Shete, S. and Amos, C. I. Testing for genetic linkage in families by a variance-components approach in the presence of genomic imprinting. Am J Hum Genet. 70:751-7, 2002. ADDRESS: Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA. sshete@mdanderson.org. Medline UID: 21832516 44. Shih, M. C. and Whittemore, A. S. Tests for genetic association using family data. Genet Epidemiol. 22:128-45, 2002. ADDRESS: Department of Health Research and Policy, Stanford University, Stanford, California 94305, USA. Medline UID: 21648507 45. Siegmund, K. D.; Vora, H.Gauderman, W. J. Combined linkage and association analysis in pedigrees. Genet Epidemiol. 21 Suppl 1:S358-63, 2001. ADDRESS: Department of Preventive Medicine, University of Southern California, Los Angeles, California, USA. Medline UID: 21651801 46. Tilquin, P.; Coppieters, W.; Elsen, J. M.; Lantier, F.; Moreno, C.Baret, P. V. Statistical power of QTL mapping methods applied to bacteria counts. Genet Res. 78:303-316, 2001. Medline UID: 11865719 47. Traut, W.; Eickhof, U.Schorch, J. C. Identification and analysis of sex chromosomes by comparative genomic hybridization (CGH). Methods Cell Sci. 23:155-61, 2001. ADDRESS: Institut fur Biologie, Medizinische Universitat Lubeck, Ratzeburger Allee 160, D-23538 Lubeck, Germany. traut@molbio.mu-luebeck.de. Medline UID: 21606290 48. Wilk, J. B.; Volcjak, J. S.; Myers, R. H.; Maher, N. E.; Knowlton, B. A.; Heard-Costa, N. L.; Demissie, S.; Cupples, L. A.DeStefano, A. L. Family-based association tests for qualitative and quantitative traits using single-nucleotide polymorphism and microsatellite data. Genet Epidemiol. 21 Suppl 1:S364-9, 2001. ADDRESS: Boston University Schools of Medicine and Public Health, Boston, Massachusetts, USA. Medline UID: 21651802 49. Wille, A. and Leal, S. M. Novel selection criteria for genome scans of complex traits. Genet Epidemiol. 21 Suppl 1:S800-4, 2001. ADDRESS: Laboratory of Statistical Genetics, Rockefeller University, 1230 York Avenue, Box 192, New York, NY 10021, USA. Medline UID: 21651878 50. Zhang, S.; Zhang, K.; Li, J.; Sun, F.Zhao, H. Test of association for quantitative traits in general pedigrees: the quantitative pedigree disequilibrium test. Genet Epidemiol. 21 Suppl 1:S370-5, 2001. ADDRESS: Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT 06520, USA. Medline UID: 21651803 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/