From crittend@itis.com Sun Jun 16 20:03:56 2002 Date: Thu, 13 Jun 2002 20:19:33 -0700 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: June, 2002 Mapping References Resent-Date: 14 Jun 2002 01:21:41 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 870 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 6/02 1. Wang, J.; Wong, G. K.; Ni, P.; Han, Y.; Huang, X.; Zhang, J.; Ye, C.; Zhang, Y.; Hu, J.; Zhang, K.; Xu, X.; Cong, L.; Lu, H.; Ren, X.; Ren, X.; He, J.; Tao, L.; Passey, D. A.; Wang, J.; Yang, H.; Yu, J.Li, S. RePS: a sequence assembler that masks exact repeats identified from the shotgun data. Genome Res. 12:824-31, 2002. ADDRESS: Hangzhou Genomics Institute, Institute of Bioinformatics of Zhejiang University, Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China. wangj@genomics.org.cn. Medline UID: 21992829 2. Walling, G. A.; Haley, C. S.; Perez-Enciso, M.; Thompson, R.Visscher, P. M. On the mapping of quantitative trait loci at marker and non-marker locations. Genet Res. 79:97-106, 2002. ADDRESS: Roslin Institute (Edinburgh), Roslin, Midlothian EH25 9PS, UK. Grant.Walling@bbsrc.ac.uk. Medline UID: 21971166 3. Wu, R.; Ma, C. X.; Wu, S. S.Zeng, Z. B. Linkage mapping of sex-specific differences. Genet Res. 79:85-96, 2002. ADDRESS: Department of Statistics, University of Florida, Gainesville, FL 32611, USA. rwu@stat.ufl.edu. Medline UID: 21971165 4. Garner, C. and Slatkin, M. Likelihood-based disequilibrium mapping for two-marker haplotype data. Theor Popul Biol. 61:153-61, 2002. ADDRESS: Department of Integrative Biology, University of California, Berkeley, California 94720-3140, USA. cgarner@socrates.berkeley.edu. Medline UID: 21967852 5. Xiong, M.; Zhao, J.Boerwinkle, E. Generalized T2 test for genome association studies. Am J Hum Genet. 70:1257-68, 2002. ADDRESS: Human Genetics Center, University of Texas-Houston, 77225, USA. mxiong@sph.uth.tmc.edu. Medline UID: 21947459 6. Zane, L.; Bargelloni, L.Patarnello, T. Strategies for microsatellite isolation: a review. Mol Ecol. 11:1-16, 2002. ADDRESS: Dipartimento di Biologia, Universita di Padova Via Ugo Bassi 58/B, 35121, Padova, Italy. Medline UID: 21901834 7. Myrick, K. V. and Gelbart, W. M. Universal Fast Walking for direct and versatile determination of flanking sequence. Gene. 284:125-31, 2002. ADDRESS: Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA. kvmyrick@mcb.harvard.edu. Medline UID: 21888627 8. Wolkenhauer, O. Mathematical modelling in the post-genome era: understanding genome expression and regulation--a system theoretic approach. Biosystems. 65:1-18, 2002. ADDRESS: Department of Biomolecular Sciences, Department of Electrical Engineering and Electronics, Control Systems Centre, UMIST, Manchester M60 1QD, UK. o.wolkenhauer@umist.ac.uk. Medline UID: 21885880 9. Gauderman, W. J. Sample size requirements for association studies of gene-gene interaction. Am J Epidemiol. 155:478-84, 2002. ADDRESS: Department of Preventive Medicine, School of Medicine, University of Southern California, 1540 Alcazar Street, Suite 220, Los Angeles, CA 90089, USA. jimg@usc.edu. Medline UID: 21855723 10. Darvasi, A. In silico mapping of mouse quantitative trait loci. Science. 294:2423, 2001. ADDRESS: Department of Evolution Systematicsand Ecology, The Hebrew University of Jerusalem, Jerusalem 91904, Israel. arield@cc.huji.ac.il. Medline UID: 21626124 11. Sauer, S.; Gelfand, D. H.; Boussicault, F.; Bauer, K.; Reichert, F.Gut, I. G. Facile method for automated genotyping of single nucleotide polymorphisms by mass spectrometry. Nucleic Acids Res. 30:e22, 2002. ADDRESS: Freie Universitat Berlin, Fachbereich Biologie, Chemie, Pharmazie, Takustrasse 3, 14195 Berlin-Dahlem, Germany. Medline UID: 21851321 12. Tong, A. K. and Ju, J. Single nucleotide polymorphism detection by combinatorial fluorescence energy transfer tags and biotinylated dideoxynucleotides. Nucleic Acids Res. 30:e19, 2002. ADDRESS: Laboratory of DNA Sequencing and Chemical Biology, Columbia Genome Center, Columbia University College of Physicians and Surgeons, 1150 St Nicholas Avenue, New York, NY 10032, USA. Medline UID: 21851318 13. Wu, R.; Ma, C. X.Casella, G. Joint linkage and linkage disequilibrium mapping of quantitative trait loci in natural populations. Genetics. 160:779-92, 2002. ADDRESS: Department of Statistics, University of Florida, Gainesville, Florida 32611, USA. rwu@stat.ufl.edu. Medline UID: 21850449 14. Mhlanga, M. M. and Malmberg, L. Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods. 25:463-71, 2001. ADDRESS: Department of Cell Biology, New York University School of Medicine, New York, New York, USA. Medline UID: 21836324 15. Haubold, B. and Wiehe, T. Calculating the SNP-effective sample size from an alignment. Bioinformatics. 18:36-8, 2002. ADDRESS: Max-Planck-Institut fur Chemische Okologie, Carl-Zeiss-Promenade 10, D-07745 Jena, Germany. Medline UID: 21825945 16. Bo, T. H.; Jonassen, I.; Eidhammer, I.Helgesen, C. A fast top-down method for constructing reliable radiation hybrid frameworks. Bioinformatics. 18:11-8, 2002. ADDRESS: Department of Informatics, University of Bergen, HIB, N5020 Bergen, Norway. trondb@ii.uib.no. Medline UID: 21825942 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/