From crittend@itis.com Tue Jul 16 14:54:47 2002 Date: Tue, 16 Jul 2002 14:29:08 -0700 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: Maping references, July, 2002 Resent-Date: 16 Jul 2002 19:26:37 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 865 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 7/02 1. Couzin, J. Genomics. New mapping project splits the community. Science. 296:1391-3, 2002. Medline UID: 22025684 2. de Kok, J. B.; Wiegerinck, E. T.; Giesendorf, B. A.Swinkels, D. W. Rapid genotyping of single nucleotide polymorphisms using novel minor groove binding DNA oligonucleotides (MGB probes). Hum Mutat. 19:554-9, 2002. ADDRESS: Department of Clinical Chemistry, University Medical Centre, Nijmegen, The Netherlands. J.dekok@ckcl.azn.nl. Medline UID: 22021366 3. Delcher, A. L.; Phillippy, A.; Carlton, J.Salzberg, S. L. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 30:2478-83, 2002. ADDRESS: Department of Computer Science, Loyola College in Maryland, Baltimore, MD 21210, USA. Medline UID: 22030822 4. Evans, D. M. The power of multivariate quantitative-trait loci linkage analysis is influenced by the correlation between variables.70:1599-602, 2002. Medline UID: 21987653 5. Fakhrai-Rad, H.; Pourmand, N.Ronaghi, M. Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms. Hum Mutat. 19:479-85, 2002. ADDRESS: Stanford Genome Technology Center, Stanford University, Palo Alto, California, USA. Medline UID: 22021358 6. Gill, R. T.; Wildt, S.; Yang, Y. T.; Ziesman, S.Stephanopoulos, G. Genome-wide screening for trait conferring genes using DNA microarrays. Proc Natl Acad Sci U S A. 99:7033-8, 2002. ADDRESS: Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA. Medline UID: 22008041 7. Huang, T. J.; Liu, M.; Knight, L. D.; Grody, W. W.; Miller, J. F.Ho, C. M. An electrochemical detection scheme for identification of single nucleotide polymorphisms using hairpin-forming probes. Nucleic Acids Res. 30:e55, 2002. ADDRESS: Mechanical and Aerospace Engineering Department, University of California-Los Angeles, Los Angeles, CA 90095-1597, USA. Medline UID: 22055475 8. McGinnis, R.; Shifman, S.Darvasi, A. Power and efficiency of the TDT and case-control design for association scans. Behav Genet. 32:135-44, 2002. ADDRESS: GlaxoSmithKline Pharmaceuticals, Harlow, Essex, United Kingdom. Ralph_McGinnis@sbphrd.com. Medline UID: 22031598 9. Mitnik, L.; Carey, L.; Burger, R.; Desmarais, S.; Koutny, L.; Wernet, O.; Matsudaira, P.Ehrlich, D. High-speed analysis of multiplexed short tandem repeats with an electrophoretic microdevice. Electrophoresis. 23:719-26, 2002. ADDRESS: Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA. Medline UID: 21888556 10. Olivier, M.; Chuang, L. M.; Chang, M. S.; Chen, Y. T.; Pei, D.; Ranade, K.; de Witte, A.; Allen, J.; Tran, N.; Curb, D.; Pratt, R.; Neefs, H.; de Arruda Indig, M.; Law, S.; Neri, B.; Wang, L.Cox, D. R. High-throughput genotyping of single nucleotide polymorphisms using new biplex invader technology. Nucleic Acids Res. 30:e53, 2002. ADDRESS: Stanford Human Genome Center, Stanford University School of Medicine, 975 California Avenue, Palo Alto, CA 94305, USA. molivier@mcw.edu. Medline UID: 22055473 11. Pan, W.; Lin, J.Le, C. T. How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach. Genome Biol. 3:research0022, 2002. ADDRESS: Division of Biostatistics, School of Public Health, University of Minnesota, 420 Delaware Street, Minneapolis, MN 55455-0378, USA. weip@biostat.umn.edu. Medline UID: 22045272 12. Phillips, T. J. and Belknap, J. K. Complex-trait genetics: emergence of multivariate strategies. Nat Rev Neurosci. 3:478-85, 2002. ADDRESS: Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR 97201, USA. phillipt@ohsu.edu. Medline UID: 22038430 13. Pickering, J.; Bamford, A.; Godbole, V.; Briggs, J.; Scozzafava, G.; Roe, P.; Wheeler, C.; Ghouze, F.Cuss, S. Integration of DNA ligation and rolling circle amplification for the homogeneous, end-point detection of single nucleotide polymorphisms. Nucleic Acids Res. 30:e60, 2002. ADDRESS: Amersham Biosciences UK Ltd, The Grove Centre, AL16, White Lion Road, Amersham, Buckinghamshire HP7 9LL, UK. judith.pickering@uk.amershambiosciences.com. Medline UID: 22055480 14. Schork, N. J. Power calculations for genetic association studies using estimated probability distributions. Am J Hum Genet. 70:1480-9, 2002. ADDRESS: Department of Psychiatry, University of California at San Diego, 2062 Basic Science Building, 9500 Gilman Drive, La Jolla, CA 92093, USA. nschork@ucsd.edu. Medline UID: 21987638 15. Stumpf, M. P. Haplotype diversity and the block structure of linkage disequilibrium. Trends Genet. 18:226-8, 2002. Medline UID: 22043924 16. van der Waaij, E. H.; Bijma, P.; Bishop, S. C.van Arendonk, J. A. Using genetic markers for disease resistance to improve production under constant infection pressure. J Anim Sci. 80:322-9, 2002. ADDRESS: Animal Breeding and Genetics Group, Wageningen Institute of Animal Sciences, The Netherlands. Liesbeth.vanderwaaij@alg.vf.wag-ur.nl. Medline UID: 21873375 17. Vargas, J. A. and del Castillo, R. F. Genetic associations under mixed mating systems: the Bennett-Binet effect. IMA J Math Appl Med Biol. 18:327-41, 2001. ADDRESS: CIIDIR-IPN Oaxaca, Xoxocotlan, Mexico. javargas1@excite.com. Medline UID: 22036873 18. von Rohr, P. and Hoeschele, I. Bayesian QTL mapping using skewed Student-t distributions. Genet Sel Evol. 34:1-21, 2002. ADDRESS: Departments of Dairy Science and Statistics, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0315, USA. Medline UID: 21927031 19. Wallin, J. M.; Holt, C. L.; Lazaruk, K. D.; Nguyen, T. H.Walsh, P. S. Constructing universal multiplex PCR systems for comparative genotyping. J Forensic Sci. 47:52-65, 2002. ADDRESS: Human Identification Group, PE Biosystems, Foster City, CA, USA. jeanette.wallin@doj.ca.gov. Medline UID: 22059276 20. Yoshimoto, K.; Iwaki, T.; Inamura, T.; Fukui, M.; Tahira, T.Hayashi, K. Multiplexed analysis of post-PCR fluorescence-labeled microsatellite alleles and statistical evaluation of their imbalance in brain tumors. Jpn J Cancer Res. 93:284-90, 2002. ADDRESS: Division of Genome Analysis, Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu University, Higashi-ku, Fukuoka 812-8582, Japan. Medline UID: 21925126 21. Zhang, K.; Deng, M.; Chen, T.; Waterman, M. S.Sun, F. A dynamic programming algorithm for haplotype block partitioning. Proc Natl Acad Sci U S A. 99:7335-9, 2002. ADDRESS: Molecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, 1042 West 36th Place, DRB142, Los Angeles, CA 90089-1113, USA. Medline UID: 22028944 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/