From crittend@itis.com Sun Mar 16 21:02:03 2003 Date: Sun, 16 Mar 2003 11:55:53 -0800 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: March, 2003 Mapping References Resent-Date: 16 Mar 2003 17:55:16 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 925 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (MAPPING METHODS AND REVIEWS) NLM 3/03 1. Bolund, L.; Fredholm, M.Bendixen, C. [The time of pigs. Genes of pigs are to be surveyed in an extensive Danish-Chinese cooperation]. Ugeskr Laeger. 164:6050-1, 2002. Medline UID: 22441313 2. Brazhnik, P.; de la Fuente, A.Mendes, P. Gene networks: how to put the function in genomics. Trends Biotechnol. 20:467-72, 2002. ADDRESS: Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA. Medline UID: 22303036 3. Dewey, T. G. >From microarrays to networks: mining expression time series. Drug Discov Today. 7:S170-5, 2002. ADDRESS: Keck Graduate Institute of Applied Life Sciences, 535 Watson Drive, Claremont, CA 91711, USA. greg_dewey@kgi.edu. Medline UID: 22435280 4. Diehn, M.; Sherlock, G.; Binkley, G.; Jin, H.; Matese, J. C.; Hernandez-Boussard, T.; Rees, C. A.; Cherry, J. M.; Botstein, D.; Brown, P. O.Alizadeh, A. A. SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. Nucleic Acids Res. 31:219-23, 2003. ADDRESS: Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA. diehn@genome.stanford.edu. Medline UID: 22408339 5. Greller, L. D. and Somogyi, R. Reverse engineers map the molecular switching yards. Trends Biotechnol. 20:445-7, 2002. Medline UID: 22303026 6. Karsenty, E.; Barillot, E.; Tosser-Klopp, G.; Lahbib-Mansais, Y.; Milan, D.; Hatey, F.; Cirera, S.; Sawera, M.; Jorgensen, C. B.; Chowdhary, B.; Fredholm, M.; Wimmers, K.; Ponsuksili, S.; Davoli, R.; Fontanesi, L.; Braglia, S.; Zambonelli, P.; Bigi, D.; Neuenschwander, S.Gellin, J. The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa). Nucleic Acids Res. 31:138-41, 2003. ADDRESS: Infobiogen, 523 place des terrasses, F-91000 Evry, France. Medline UID: 22408320 7. Kozak, M. Pushing the limits of the scanning mechanism for initiation of translation. Gene. 299:1-34, 2002. ADDRESS: Department of Biochemistry, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, 675 Hoes Lane, Piscataway, NJ 08854, USA. kozakma@umdnj.edu. Medline UID: 22347312 8. Kulski, J. K.; Shiina, T.; Anzai, T.; Kohara, S.Inoko, H. Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. Immunol Rev. 190:95-122, 2002. ADDRESS: Department of Molecular Life Science, Tokai University School of Medicine, Bohseidai, Isehara, Kanagawa, Japan. Medline UID: 22381002 9. Leveugle, M.; Prat, K.; Perrier, N.; Birnbaum, D.Coulier, F. ParaDB: a tool for paralogy mapping in vertebrate genomes. Nucleic Acids Res. 31:63-7, 2003. ADDRESS: Laboratoire d'Oncologie Moleculaire, Unite 119 INSERM, Marseille, France. leveugle@marseille.inserm.fr. Medline UID: 22408301 10. Li, Y. C.; Korol, A. B.; Fahima, T.; Beiles, A.Nevo, E. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol. 11:2453-65, 2002. ADDRESS: Institute of Evolution, University of Haifa, Haifa 31905, Israel. Medline UID: 22342326 11. Nicod, J. C. and Largiader, C. R. SNPs by AFLP (SBA): a rapid SNP isolation strategy for non-model organisms. Nucleic Acids Res. 31:e19, 2003. ADDRESS: CMPG, Zoological Institute, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland. Medline UID: 22484129 12. O'Rourke, K. And coming around the track, looking promising ... the horse genome map. J Am Vet Med Assoc. 221:15, 20, 2002. Medline UID: 22307896 13. Schlotterer, C. Hitchhiking mapping--functional genomics from the population genetics perspective. Trends Genet. 19:32-8, 2003. ADDRESS: Institut fur Tierzucht und Genetik, Josef-Baumann Gasse 1, 1210, Vienna, Austria. christian.schloetterer@vu-wien.ac.at. Medline UID: 22382261 14. Sorek, R. and Safer, H. M. A novel algorithm for computational identification of contaminated EST libraries. Nucleic Acids Res. 31:1067-74, 2003. ADDRESS: Compugen Ltd, 72 Pinchas Rosen Street, Tel Aviv 69512, Israel. rotem@compugen.co.il. Medline UID: 22448074 15. von Mering, C.; Huynen, M.; Jaeggi, D.; Schmidt, S.; Bork, P.Snel, B. STRING: a database of predicted functional associations between proteins. Nucleic Acids Res. 31:258-61, 2003. ADDRESS: European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. Medline UID: 22408349 16. Wang, J. Q. Analysis of mRNA expression using double in situ hybridization labeling with isotopic and nonisotopic probes. Methods Mol Med. 79:153-9, 2003. ADDRESS: Division of Pharmacology, University of Missouri-Kansas City, School of Pharmacy, Kansas City, MO, USA. Medline UID: 22395377 17. Wheeler, D. L.; Church, D. M.; Federhen, S.; Lash, A. E.; Madden, T. L.; Pontius, J. U.; Schuler, G. D.; Schriml, L. M.; Sequeira, E.; Tatusova, T. A.Wagner, L. Database resources of the National Center for Biotechnology. Nucleic Acids Res. 31:28-33, 2003. ADDRESS: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA. wheeler@ncbi.nlm.nih.gov. Medline UID: 22408294 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/