From crittend@itis.com Thu Sep 18 10:00:27 2003
Date: Wed, 14 May 2003 15:13:09 -0700
From: Lyman/Margaret Crittenden <crittend@itis.com>
To: Multiple Recipients of <angenmap@genome.ansci.iastate.edu>
Subject: May, 2003 Genomics References
Resent-Date: 14 May 2003 20:12:43 -0000
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The PubMed search strategy has been updated to include more functional
genomics references such as microarrays etc.  This increased the number of
papers to screen through for relevance to the Angen group, so the strategy
has also been changed to only include papers that are classified as Methods
or Reviews by the National Library of Medicine in their MESH system.  This
change is retroactive to December, 2002 so the number of references will
probably reduce in the future.

JOURNAL REFS. (GENOMICS METHODS AND REVIEWS) NLM 5/03

	1. 	Adey, N. B.; Lei, M.; Howard, M. T.; Jensen, J. D.; Mayo, D. A.;
Butel, D. L.; Coffin, S. C.; Moyer, T. C.; Slade, D. E.; Spute, M. K.;
Hancock, A. M.; Eisenhoffer, G. T.; Dalley, B. K.McNeely, M. R.
Gains in sensitivity with a device that mixes microarray hybridization
solution in a 25-microm-thick chamber.
Anal Chem. 74:6413-7, 2002.
ADDRESS: BioMicro Systems, Inc., 1290 W, 2320 S, Suite D, Salt Lake City,
Utah 84119, USA. nils@wasatchbioconsulting.com.
Medline UID: 22398545

	2. 	Aebersold, R.
Constellations in a cellular universe.
Nature. 422:115-6, 2003.
ADDRESS: Department of Molecular Biology, University of Washington,
Seattle, Washington, 98195-7730, USA.
Medline UID: 22521611

	3. 	Aebersold, R. and Mann, M.
Mass spectrometry-based proteomics.
Nature. 422:198-207, 2003.
ADDRESS: Institute for Systems Biology, 1441 North 34th Street, Seattle,
Washington 98103-8904, USA. raebersold@systemsbiology.org.
Medline UID: 22521649

	4. 	Albert, T. J.; Norton, J.; Ott, M.; Richmond, T.; Nuwaysir, K.;
Nuwaysir, E. F.; Stengele, K. P.Green, R. D.
Light-directed 5'-->3' synthesis of complex oligonucleotide microarrays.
Nucleic Acids Res. 31:e35, 2003.
ADDRESS: NimbleGen Systems Inc., One Science Court, Madison, WI 53711, USA.
talbert@nimblegen.com.
Medline UID: 22542222

	5. 	Andersen, P. S.; Jespersgaard, C.; Vuust, J.; Christiansen, M.Larsen,
L. A.
Capillary electrophoresis-based single strand DNA conformation analysis in
high-throughput mutation screening.
Hum Mutat. 21:455-65, 2003.
ADDRESS: Department of Clinical Biochemistry, Statens Serum Institute,
Copenhagen, Denmark. psa@ssi.dk.
Medline UID: 22560386

	6. 	Aoyagi, K.; Tatsuta, T.; Nishigaki, M.; Akimoto, S.; Tanabe, C.;
Omoto, Y.; Hayashi, S.; Sakamoto, H.; Sakamoto, M.; Yoshida, T.; Terada,
M.Sasaki, H.
A faithful method for PCR-mediated global mRNA amplification and its
integration into microarray analysis on laser-captured cells.
Biochem Biophys Res Commun. 300:915-20, 2003.
ADDRESS: Genetics Division, National Cancer Center Research Institute, 1-1,
Tsukiji 5-chrome, Chuo-ku, Tokyo 104-0045, Japan. kaaoyagi@gan2.res.ncc.go.jp.
Medline UID: 22446382

	7. 	Aujame, L.; Burdin, N.Vicari, M.
How microarrays can improve our understanding of immune responses and
vaccine development.
Ann N Y Acad Sci. 975:1-23, 2002.
ADDRESS: Campus Merieux, 69280 Marcy l'Etoile, France. Luc.Aujame@aventis.com.
Medline UID: 22425418

	8. 	Barrett, J. C. and Kawasaki, E. S.
Microarrays: the use of oligonucleotides and cDNA for the analysis of gene
expression.
Drug Discov Today. 8:134-41, 2003.
ADDRESS: Center for Cancer Research, National Cancer Institute, 31 Center
Drive, MSC-2440, 20892, Bethesda, MD, USA.
Medline UID: 22456442

	9. 	Blackshaw, S.; Kuo, W. P.; Park, P. J.; Tsujikawa, M.; Gunnersen, J.
M.; Scott, H. S.; Boon, W. M.; Tan, S. S.Cepko, C. L.
MicroSAGE is highly representative and reproducible but reveals major
differences in gene expression among samples obtained from similar tissues.
Genome Biol. 4:R17, 2003.
ADDRESS: Department of Genetics, Harvard Medical School and Howard Hughes
Medical Institute, 200 Longwood Avenue, Boston, MA 02115, USA.
Medline UID: 22508172

	10. 	Chowdhary, B. P.; Raudsepp, T.; Kata, S. R.; Goh, G.; Millon, L. V.;
Allan, V.; Piumi, F.; Guerin, G.; Swinburne, J.; Binns, M.; Lear, T. L.;
Mickelson, J.; Murray, J.; Antczak, D. F.; Womack, J. E.Skow, L. C.
The first-generation whole-genome radiation hybrid map in the horse
identifies conserved segments in human and mouse genomes.
Genome Res. 13:742-51, 2003.
ADDRESS: Department of Veterinary Anatomy and Public Health, College of
Veterinary Medicine, Texas A&M University, College Station, Texas 77843,
USA. bchowdhary@cvm.tamu.edu.
Medline UID: 22557650

	11. 	Coates, P. J. and Hall, P. A.
The yeast two-hybrid system for identifying protein-protein interactions.
J Pathol. 199:4-7, 2003.
ADDRESS: Department of Molecular and Cellular Pathology, University of
Dundee, Ninewells Hospital and Medical School, Dundee, DD1 9SY, UK.
p.j.coates@dundee.ac.uk.
Medline UID: 22361765

	12. 	Conway, T. and Schoolnik, G. K.
Microarray expression profiling: capturing a genome-wide portrait of the
transcriptome.
Mol Microbiol. 47:879-89, 2003.
ADDRESS: Advanced Center for Genome Technology, The University of Oklahoma,
Norman, OK 73019-0245, USA. tconway@ou.edu.
Medline UID: 22470163

	13. 	Cui, X. and Churchill, G. A.
Statistical tests for differential expression in cDNA microarray experiments.
Genome Biol. 4:210, 2003.
ADDRESS: The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA.
Medline UID: 22588522

	14. 	Darvasi, A.
Genomics: Gene expression meets genetics.
Nature. 422:269-70, 2003.
Medline UID: 22533900

	15. 	Dieterich, C.; Wang, H.; Rateitschak, K.; Luz, H.Vingron, M.
CORG: a database for COmparative Regulatory Genomics.
Nucleic Acids Res. 31:55-7, 2003.
ADDRESS: Max-Planck-Institute for Molecular Genetics, Ihnestrasse 73, 14195
Berlin, Germany. dieteric@molgen.mpg.de.
Medline UID: 22408299

	16. 	Dilks, D. W.; Ring, R. H.; Khawaja, X. Z.; Novak, T. J.Aston, C.
High-throughput confirmation of differential display PCR results using
reverse Northern blotting.
J Neurosci Methods. 123:47-54, 2003.
ADDRESS: Wyeth Research, Neuroscience, CN-8000, Princeton, NJ 08543-8000, USA.
Medline UID: 22469957

	17. 	Doniger, S. W.; Salomonis, N.; Dahlquist, K. D.; Vranizan, K.;
Lawlor, S. C.Conklin, B. R.
MAPPFinder: using Gene Ontology and GenMAPP to create a global
gene-expression profile from microarray data.
Genome Biol. 4:R7, 2003.
ADDRESS: Gladstone Institute of Cardiovascular Disease, University of
California, San Francisco, CA 94141-9100, USA.
Medline UID: 22428626

	18. 	Drobyshev, A. L.; Machka, C.; Horsch, M.; Seltmann, M.; Liebscher,
V.; Hrabe de Angelis, M.Beckers, J.
Specificity assessment from fractionation experiments (SAFE): a novel
method to evaluate microarray probe specificity based on hybridisation
stringencies.
Nucleic Acids Res. 31:E1-1, 2003.
ADDRESS: Institute of Experimental Genetics, GSF-National Research Centre
for Environment and Health, Ingolstaedter Landstrasse 1, 85764 Neuherberg,
Germany.
Medline UID: 22415718

	19. 	Dueymes, C.; Decout, J. L.; Peltie, P.Fontecave, M.
Fluorescent deazaflavin-oligonucleotide probes for selective detection of DNA.
Angew Chem Int Ed Engl. 41:486-9, 2002.
ADDRESS: DBMS-CB UMR Universite J. Fourier, CNRS, CEA no. 5047, CEA
Grenoble, 17 Avenue des Martyrs, France.
Medline UID: 22378114

	20. 	Epstein, M. P.; Lin, X.Boehnke, M.
A tobit variance-component method for linkage analysis of censored trait data.
Am J Hum Genet. 72:611-20, 2003.
ADDRESS: Department of Biostatistics, University of Michigan, Ann Arbor,
MI, USA. mepstein@genetics.emory.edu.
Medline UID: 22478671

	21. 	Fiegler, H.; Carr, P.; Douglas, E. J.; Burford, D. C.; Hunt, S.;
Smith, J.; Vetrie, D.; Gorman, P.; Tomlinson, I. P.Carter, N. P.
DNA microarrays for comparative genomic hybridization based on DOP-PCR
amplification of BAC and PAC clones.
Genes Chromosomes Cancer. 36:361-74, 2003.
ADDRESS: Wellcome Trust Sanger Institute/Cancer Research UK Genomic
Microarray Group, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Medline UID: 22505360

	22. 	Freel Meyers, C. L. and Borch, R. F.
Novel method for the immobilization of nucleotides.
Org Lett. 5:341-4, 2003.
ADDRESS: Department of Medicinal Chemistry and Molecular Pharmacology and
Cancer Center, Purdue University, West Lafayette, Indiana 47907, USA.
caren_meyers@hms.harvard.edu.
Medline UID: 22444842

	23. 	Gupta, V.; Cherkassky, A.; Chatis, P.; Joseph, R.; Johnson, A. L.;
Broadbent, J.; Erickson, T.DiMeo, J.
Directly labeled mRNA produces highly precise and unbiased differential
gene expression data.
Nucleic Acids Res. 31:e13, 2003.
ADDRESS: Research and Development, PerkinElmer Life and Analytical
Sciences, 549 Albany Street, Boston, MA 02118, USA.
vineet.gupta@perkinelmer.com.
Medline UID: 22470256

	24. 	Hanash, S.
Disease proteomics.
Nature. 422:226-32, 2003.
ADDRESS: Department of Pediatrics, University of Michigan, 1150 West
Medical Center Drive, Ann Arbor, Michigan 48109, USA. shanash@umich.edu.
Medline UID: 22521652

	25. 	Hatfield, G. W.; Hung, S. P.Baldi, P.
Differential analysis of DNA microarray gene expression data.
Mol Microbiol. 47:871-7, 2003.
ADDRESS: Department of Microbiology, Institute for Genomics and
Bioinformatics, University of California, Irvine, Irvine, CA 92697, USA.
gwhatfie@uci.edu.
Medline UID: 22470162

	26. 	He, M. and Taussig, M. J.
DiscernArray technology: a cell-free method for the generation of protein
arrays from PCR DNA.
J Immunol Methods. 274:265-70, 2003.
ADDRESS: Discerna Limited, Babraham Research Campus, Babraham, CB2 4AT,
Cambridge, UK. m.he@discerna.co.uk.
Medline UID: 22497346

	27. 	Hekstra, D.; Taussig, A. R.; Magnasco, M.Naef, F.
Absolute mRNA concentrations from sequence-specific calibration of
oligonucleotide arrays.
Nucleic Acids Res. 31:1962-8, 2003.
ADDRESS: Center for Studies in Physics and Biology, Laboratory of
Mathematical Physics, Rockefeller University, 1230 York Avenue, New York,
NY 10021, USA.
Medline UID: 22542212

	28. 	Herrero, J. and Dopazo, J.
Combining hierarchical clustering and self-organizing maps for exploratory
analysis of gene expression patterns.
J Proteome Res. 1:467-70, 2002.
ADDRESS: Bioinformatics Unit, Spanish National Cancer Center (CNIO),
Melchor Fernandez Almagro 3, 28029 Madrid, Spain.
Medline UID: 22532471

	29. 	Hessner, M. J.; Wang, X.; Hulse, K.; Meyer, L.; Wu, Y.; Nye, S.; Guo,
S. W.Ghosh, S.
Three color cDNA microarrays: quantitative assessment through the use of
fluorescein-labeled probes.
Nucleic Acids Res. 31:e14, 2003.
ADDRESS: The Max McGee National Research Center for Juvenile Diabetes, The
Medical College of Wisconsin and Children's Hospital of Wisconsin, 8701
Watertown Plank Road, Milwaukee, WI 53226, USA. mhessner@mcw.edu.
Medline UID: 22470257

	30. 	Huang, J. and Jiang, Y.
Genetic linkage analysis of a dichotomous trait incorporating a tightly
linked quantitative trait in affected sib pairs.
Am J Hum Genet. 72:949-60, 2003.
ADDRESS: Department of Statistics and Actuarial Science, Division of
Statistical Genetics, University of Iowa, Iowa City, IA 52242, USA.
jian-huang@uiowa.edu.
Medline UID: 22534984

	31. 	Irizarry, R. A.; Bolstad, B. M.; Collin, F.; Cope, L. M.; Hobbs,
B.Speed, T. P.
Summaries of Affymetrix GeneChip probe level data.
Nucleic Acids Res. 31:e15, 2003.
ADDRESS: Department of Biostatistics, Johns Hopkins University, Baltimore,
MD 21205, USA. rafa@jhu.edu.
Medline UID: 22470258

	32. 	Kadota, K.; Nishimura, S.; Bono, H.; Nakamura, S.; Hayashizaki, Y.;
Okazaki, Y.Takahashi, K.
Detection of genes with tissue-specific expression patterns using Akaike's
information criterion procedure.
Physiol Genomics. 12:251-9, 2003.
ADDRESS: Computational Biology Research Center, National Institute of
Advanced Industrial Science and Technology, Tokyo 135-0064 Japan.
Medline UID: 22462587

	33. 	Kajiyama, T.; Miyahara, Y.; Kricka, L. J.; Wilding, P.; Graves, D.
J.; Surrey, S.Fortina, P.
Genotyping on a thermal gradient DNA chip.
Genome Res. 13:467-75, 2003.
ADDRESS: Hitachi High-Technologies Corporation, Hitachinaka-shi,
Ibaraki-ken, 312-8504 Japan.
Medline UID: 22505428

	34. 	Kamme, F. and Erlander, M. G.
Global gene expression analysis of single cells.
Curr Opin Drug Discov Devel. 6:231-6, 2003.
ADDRESS: Johnson & Johnson Pharmaceutical R&D LLC, San Diego, CA 92121, USA.
Medline UID: 22556528

	35. 	Kiss, C.; Nishikawa, J.; Dieckmann, A.; Takada, K.; Klein, G.Szekely, L.
Improved subtractive suppression hybridization combined with high density
cDNA array screening identifies differentially expressed viral and cellular
genes.
J Virol Methods. 107:195-203, 2003.
ADDRESS: Microbiology and Tumor Biology Center (MTC), Karolinska Institute,
Nobels vag 16, S-17177, Stockholm, Sweden.
Medline UID: 22393779

	36. 	Koopmann, J. O. and Blackburn, J.
High affinity capture surface for matrix-assisted laser
desorption/ionisation compatible protein microarrays.
Rapid Commun Mass Spectrom. 17:455-62, 2003.
ADDRESS: Procognia Ltd, Babraham Hall, Babraham, Cambridge CB2 4AT, UK.
Jens.koopmann@procognia.com.
Medline UID: 22478332

	37. 	Lage, J. M.; Leamon, J. H.; Pejovic, T.; Hamann, S.; Lacey, M.;
Dillon, D.; Segraves, R.; Vossbrinck, B.; Gonzalez, A.; Pinkel, D.;
Albertson, D. G.; Costa, J.Lizardi, P. M.
Whole genome analysis of genetic alterations in small DNA samples using
hyperbranched strand displacement amplification and array-CGH.
Genome Res. 13:294-307, 2003.
ADDRESS: Department of Pathology, Yale University School of Medicine, New
Haven, Connecticut 06510, USA.
Medline UID: 22453526

	38. 	Lilleberg, S. L.
In-depth mutation and SNP discovery using DHPLC gene scanning.
Curr Opin Drug Discov Devel. 6:237-52, 2003.
ADDRESS: Transgenomic Inc, 12325 Emmet Street, Omaha, NE 68164, USA.
slilleberg@transgenomic.com.
Medline UID: 22556529

	39. 	Liu, W. H.; Kaur, M.Makrigiorgos, G. M.
Detection of hotspot mutations and polymorphisms using an enhanced PCR-RFLP
approach.
Hum Mutat. 21:535-41, 2003.
ADDRESS: Department of Radiation Oncology, Dana Farber Cancer Institute,
Harvard Medical School, Boston, Massachusetts, USA.
Medline UID: 22560395

	40. 	Luebke, K. J.; Balog, R. P.Garner, H. R.
Prioritized selection of oligodeoxyribonucleotide probes for efficient
hybridization to RNA transcripts.
Nucleic Acids Res. 31:750-8, 2003.
ADDRESS: Center for Biomedical Inventions, University of Texas Southwestern
Medical Center at Dallas, Dallas, TX 75390-9185, USA.
kevin.luebke@utsouthwestern.edu.
Medline UID: 22415713

	41. 	Lyons-Weiler, J.; Patel, S.Bhattacharya, S.
A classification-based machine learning approach for the analysis of
genome-wide expression data.
Genome Res. 13:503-12, 2003.
ADDRESS: Department of Biological Sciences, University of Massachusetts,
Lowell, Massachusetts 01854, USA. lyonsweilerj@msx.upmc.edu.
Medline UID: 22505433

	42. 	Mariani, T. J.; Budhraja, V.; Mecham, B. H.; Gu, C. C.; Watson, M.
A.Sadovsky, Y.
A variable fold change threshold determines significance for expression
microarrays.
FASEB J. 17:321-3, 2003.
ADDRESS: Division of Pulmonary and Critical Care, Department of Medicine,
Brigham and Women's Hospital at Harvard Medical School, Boston,
Massachusetts 02115, USA. tmariani@rics.bwh.harvard.edu.
Medline UID: 22441964

	43. 	Martinez, M. J.; Aragon, A. D.; Rodriguez, A. L.; Weber, J. M.;
Timlin, J. A.; Sinclair, M. B.; Haaland, D. M.Werner-Washburne, M.
Identification and removal of contaminating fluorescence from commercial
and in-house printed DNA microarrays.
Nucleic Acids Res. 31:e18, 2003.
ADDRESS: Department of Biology, University of New Mexico, Albuquerque, NM
87131, USA.
Medline UID: 22470261

	44. 	Nam, J. H.; Yu, C. H.; Hwang, K. A.; Kim, S.; Ahn, S. H.; Shin, J.
Y.; Choi, W. Y.; Joo, Y. R.Park, K. Y.
Application of cDNA microarray technique to detection of gene expression in
host cells infected with viruses.
Acta Virol. 46:141-6, 2002.
ADDRESS: Department of Virology, Korean National Institute of Health, 5
Nokbun-dong, Eunpyung-gu, Seoul, 122-701, Korea. Jnam66@yahoo.com.
Medline UID: 22467787

	45. 	Patterson, S. D. and Aebersold, R. H.
Proteomics: the first decade and beyond.
Nat Genet. 33 Suppl:311-23, 2003.
ADDRESS: Celera Genomics Corporation, 45 West Gude Drive, Rockville,
Maryland 20850, USA. scottp@farmalbiomed.com.
Medline UID: 22497813

	46. 	Pennie, W. D.
Custom cDNA microarrays; technologies and applications.
Toxicology. 181-182:551-4, 2002.
ADDRESS: Syngenta Central Toxicology Laboratory, Alderley Park,
Macclesfield, Cheshire SK10 4TJ, UK. bill.pennie@syngenta.com.
Medline UID: 22394454

	47. 	Phizicky, E.; Bastiaens, P. I.; Zhu, H.; Snyder, M.Fields, S.
Protein analysis on a proteomic scale.
Nature. 422:208-15, 2003.
ADDRESS: University of Rochester School of Medicine, Department of
Biochemistry and Biophysics, Box 712, 601 Elmwood Avenue, Rochester, New
York 14642, USA. eric_phizicky@urmc.rochester.edu.
Medline UID: 22521650

	48. 	Pombo, A.
Cellular genomics: which genes are transcribed, when and where?
Trends Biochem Sci. 28:6-9, 2003.
ADDRESS: MRC - Clinical Sciences Centre, Faculty of Medicine, Imperial
College of Science, Technology and Medicine, Hammersmith Hospital Campus,
Du Cane Road, W12 0NN, London, UK. ana.pombo@csc.mrc.ac.uk.
Medline UID: 22406497

	49. 	Ressom, H.; Reynolds, R.Varghese, R. S.
Increasing the efficiency of fuzzy logic-based gene expression data analysis.
Physiol Genomics. 13:107-17, 2003.
ADDRESS: Intelligent Systems Laboratory, Department of Electrical and
Computer Engineering, University of Maine, Orono, Maine 04469, USA.
ressom@eece.maine.edu.
Medline UID: 22586994

	50. 	Sawa, T. and Ohno-Machado, L.
A neural network-based similarity index for clustering DNA microarray data.
Comput Biol Med. 33:1-15, 2003.
ADDRESS: Division of Health Sciences and Technology, Harvard Medical School
and Massachusetts Institute of Technology, 77 Massachusetts Avenue,
Cambridge, MA 02139, USA. tsawa@dsg.harvard.edu.
Medline UID: 22373349

	51. 	Shahi, S. K.; Ranga, S.Srivastava, R.
Biochip array technology for simultaneous multianalyte analysis--an
integrated laboratory system.
Indian J Pathol Microbiol. 45:5-6, 2002.
Medline UID: 22480993

	52. 	Shmulevich, I.; Astola, J.; Cogdell, D.; Hamilton, S. R.Zhang, W.
Data extraction from composite oligonucleotide microarrays.
Nucleic Acids Res. 31:e36, 2003.
ADDRESS: Cancer Genomics Laboratory, University of Texas M. D. Anderson
Cancer Center, 1515 Holcombe Boulevard, Unit 85, Houston, TX 77030, USA.
is@ieee.org.
Medline UID: 22542223

	53. 	Smith, L.; Underhill, P.; Pritchard, C.; Tymowska-Lalanne, Z.;
Abdul-Hussein, S.; Hilton, H.; Winchester, L.; Williams, D.; Freeman, T.;
Webb, S.Greenfield, A.
Single primer amplification (SPA) of cDNA for microarray expression analysis.
Nucleic Acids Res. 31:e9, 2003.
ADDRESS: MRC Mammalian Genetics Unit, Harwell, Didcot, Oxfordshire OX11
0RD, UK. l.smith@har.mrc.ac.uk.
Medline UID: 22448081

	54. 	Soinov, L. A.; Krestyaninova, M. A.Brazma, A.
Towards reconstruction of gene networks from expression data by supervised
learning.
Genome Biol. 4:R6, 2003.
ADDRESS: Microarray Informatics Group, European Bioinformatics Institute,
Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. lev@ebi.ac.uk.
Medline UID: 22428625

	55. 	Stears, R. L.; Martinsky, T.Schena, M.
Trends in microarray analysis.
Nat Med. 9:140-5, 2003.
ADDRESS: TeleChem International, Inc., Sunnyvale, California, USA.
Medline UID: 22402194

	56. 	't Hoen, P. A.; de Kort, F.; van Ommen, G. J.den Dunnen, J. T.
Fluorescent labelling of cRNA for microarray applications.
Nucleic Acids Res. 31:e20, 2003.
ADDRESS: Center for Human and Clinical Genetics, Leiden University Medical
Center, Wassenaarseweg 72, 2333 AL Leiden, The Netherlands. p.a.c.hoen@lumc.nl.
Medline UID: 22484130

	57. 	Tyers, M. and Mann, M.
>From genomics to proteomics.
Nature. 422:193-7, 2003.
ADDRESS: Samuel Lunenfeld Research Institute, Mount Sinai Hospital, and
Department of Medical Genetics and Microbiology, University of Toronto,
Toronto, Canada M5G 1X5. tyers@mshri.on.ca.
Medline UID: 22521648

	58. 	Valafar, F.
Pattern recognition techniques in microarray data analysis: a survey.
Ann N Y Acad Sci. 980:41-64, 2002.
ADDRESS: Department of Computer Science, San Diego State University,
California 92182, USA. faramarz@sciences.sdsu.edu.
Medline UID: 22481908

	59. 	Vilain, C.; Libert, F.; Venet, D.; Costagliola, S.Vassart, G.
Small amplified RNA-SAGE: an alternative approach to study transcriptome
from limiting amount of mRNA.
Nucleic Acids Res. 31:e24, 2003.
ADDRESS: Institute of Interdisciplinary Research (IRIBHM), Universite Libre
de Bruxelles, 808 route de Lennik, B-1070 Bruxelles, Belgium.
cavilain@ulb.ac.be.
Medline UID: 22514421

	60. 	Wang, H. Y.; Malek, R. L.; Kwitek, A. E.; Greene, A. S.; Luu, T. V.;
Behbahani, B.; Frank, B.; Quackenbush, J.Lee, N. H.
Assessing unmodified 70-mer oligonucleotide probe performance on
glass-slide microarrays.
Genome Biol. 4:R5, 2003.
ADDRESS: The Institute for Genomic Research, 9712 Medical Center Drive,
Rockville, MD 20850, USA.
Medline UID: 22428624

	61. 	Weller, M. G.
Classification of protein microarrays and related techniques.
Anal Bioanal Chem. 375:15-7, 2003.
ADDRESS: Institute of Hydrochemistry, Technische Universitat Munchen,
Marchioninistr. 17, 81377 Munchen, Germany. michael.weller@ch.tum.de.
Medline UID: 22407185

	62. 	Worst, T. J.; Freeman, W. M.; Walker, S. J.Vrana, K. E.
Systematic screening of gene expression using a cDNA macroarray.
Methods Mol Med. 79:243-59, 2003.
ADDRESS: Department of Physiology and Pharmacology, Wake Forest University
School of Medicine, Winston-Salem, NC, USA.
Medline UID: 22395383

	63. 	Xu, H.; Sha, M. Y.; Wong, E. Y.; Uphoff, J.; Xu, Y.; Treadway, J. A.;
Truong, A.; O'Brien, E.; Asquith, S.; Stubbins, M.; Spurr, N. K.; Lai, E.
H.Mahoney, W.
Multiplexed SNP genotyping using the Qbead system: a quantum dot-encoded
microsphere-based assay.
Nucleic Acids Res. 31:e43, 2003.
ADDRESS: Quantum Dot Corporation, 26118 Research Road, Hayward, CA 94545, USA.
Medline UID: 22569169

	64. 	Yanai, I.
The integrated world of functional genomics.
Genome Biol. 4:301, 2003.
ADDRESS: Department of Molecular Genetics, Weizmann Institute of Science,
Rehovot, 76100, Israel. itai.yanai@weizmann.ac.il.
Medline UID: 22426082


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Margaret and Lyman Crittenden     e-mail: crittend@itis.com
8550 Highway 19                          Phone: 608-798-0791
Cross Plains, WI 53528
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