From crittend@itis.com Sun Mar 14 13:36:41 2004 Date: Fri, 12 Mar 2004 16:25:13 -0800 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: March, 2004 Genomics References Resent-Date: 12 Mar 2004 22:24:31 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 1034 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ These references can be down loaded for direct entry into ProCite or Reference Manager from: www.genome.iastate.edu/ftp/ref/ Instructions are at the web page. JOURNAL REFS. (GENOMICS METHODS AND REVIEWS) NLM 3/04 1. Abiola, O.; Angel, J. M.; Avner, P.; Bachmanov, A. A.; Belknap, J. K.; Bennett, B.; Blankenhorn, E. P.; Blizard, D. A.; Bolivar, V.; Brockmann, G. A.; Buck, K. J.; Bureau, J. F.; Casley, W. L.; Chesler, E. J.; Cheverud, J. M.; Churchill, G. A.; Cook, M.; Crabbe, J. C.; Crusio, W. E.; Darvasi, A.; de Haan, G.; Dermant, P.; Doerge, R. W.; Elliot, R. W.; Farber, C. R.; Flaherty, L.; Flint, J.; Gershenfeld, H.; Gibson, J. P.; Gu, J.; Gu, W.; Himmelbauer, H.; Hitzemann, R.; Hsu, H. C.; Hunter, K.; Iraqi, F. F.; Jansen, R. C.; Johnson, T. E.; Jones, B. C.; Kempermann, G.; Lammert, F.; Lu, L.; Manly, K. F.; Matthews, D. B.; Medrano, J. F.; Mehrabian, M.; Mittlemann, G.; Mock, B. A.; Mogil, J. S.; Montagutelli, X.; Morahan, G.; Mountz, J. D.; Nagase, H.; Nowakowski, R. S.; O'Hara, B. F.; Osadchuk, A. V.; Paigen, B.; Palmer, A. A.; Peirce, J. L.; Pomp, D.; Rosemann, M.; Rosen, G. D.; Schalkwyk, L. C.; Seltzer, Z.; Settle, S.; Shimomura, K.; Shou, S.; Sikela, J. M.; Siracusa, L. D.; Spearow, J. L.; Teuscher, C.; Threadgill, D. W.; Toth, L. A.; Toye, A. A.; Vadasz, C.; Van Zant, G.; Wakeland, E.; Williams, R. W.; Zhang, H. G.Zou, F. The nature and identification of quantitative trait loci: a community's view. Nat Rev Genet. 4:911-6, 2003. CORPORATE NAME: Complex Trait Consortium. Medline UID: 14634638 2. Allen, J. E.; Pertea, M.Salzberg, S. L. Computational gene prediction using multiple sources of evidence. Genome Res. 14:142-8, 2004. ADDRESS: The Institute for Genomic Research, Rockville, Maryland 20850, USA. jallen@tigr.org. Medline UID: 14707176 3. Auer, H.; Lyianarachchi, S.; Newsom, D.; Klisovic, M. I.; Marcucci, U.Kornacker, K. Chipping away at the chip bias: RNA degradation in microarray analysis.35:292-3, 2003. Medline UID: 14647279 4. Bulyk, M. L. Computational prediction of transcription-factor binding site locations. Genome Biol. 5:201, 2003. ADDRESS: Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, New Research Building, 77 Avenue Louis Pasteur, Boston, MA 02115, USA. mlbulyk@rascal.med.harvard.edu. Medline UID: 14709165 5. Fixe, F.; Dufva, M.; Telleman, P.Christensen, C. B. Functionalization of poly(methyl methacrylate) (PMMA) as a substrate for DNA microarrays. Nucleic Acids Res. 32:e9, 2004. ADDRESS: INESC, Microsistemas e Nanotecnologias (INESC-MN), Rua Alves Redol, 9, 1000-029 Lisboa, Portugal. Medline UID: 14718554 6. Hizer, S. E.; Wright, T. M.Garcia, D. K. Genetic markers applied in regression tree prediction models. Anim Genet. 35:50-2, 2004. ADDRESS: Department of Biological Sciences, California State University, San Marcos, CA 92026, USA. Medline UID: 14731230 7. Jim, K.; Parmar, K.; Singh, M.Tavazoie, S. A cross-genomic approach for systematic mapping of phenotypic traits to genes. Genome Res. 14:109-15, 2004. ADDRESS: Department of Computer Science, Princeton University, Princeton, New Jersey, 08544 USA. Medline UID: 14707173 8. Lavebratt, C.; Sengul, S.; Jansson, M.Schalling, M. Pyrosequencing-based SNP allele frequency estimation in DNA pools. Hum Mutat. 23:92-7, 2004. ADDRESS: Department of Molecular Medicine, Karolinska Institutet, Karolinska Hospital, Stockholm, Sweden. catharina.lavebratt@cmm.ki.se. Medline UID: 14695537 9. Lee, S. I. and Batzoglou, S. Application of independent component analysis to microarrays. Genome Biol. 4:R76, 2003. ADDRESS: Department of Computer Science, Stanford University, Stanford, CA94305-9010, USA. Medline UID: 14611662 10. Mah, N.; Thelin, A.; Lu, T.; Nikolaus, S.; Kuhbacher, T.; Gurbuz, Y.; Eickhoff, H.; Kloppel, G.; Lehrach, H.; Mellgard, B.; Costello, C. M.Schreiber, S. A comparison of oligonucleotide and cDNA-based microarray systems. Physiol Genomics. 16:361-70, 2004. ADDRESS: First Department of Medicine, Christian-Albrechts-University Kiel, D-24105 Kiel, Germany. Medline UID: 14645736 11. Mantripragada, K. K.; Buckley, P. G.; de Stahl, T. D.Dumanski, J. P. Genomic microarrays in the spotlight. Trends Genet. 20:87-94, 2004. ADDRESS: Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, 751 85 Uppsala, Sweden. Medline UID: 14746990 12. Murphy, K. M. and Berg, K. D. Mutation and single nucleotide polymorphism detection using temperature gradient capillary electrophoresis. Expert Rev Mol Diagn. 3:811-8, 2003. ADDRESS: Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. kmurphy4@jhmi.edu. Medline UID: 14628908 13. Namy, O.; Rousset, J. P.; Napthine, S.Brierley, I. Reprogrammed genetic decoding in cellular gene expression. Mol Cell. 13:157-68, 2004. ADDRESS: Division of Virology, Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, United Kingdom. on205@mole.bio.cam.ac.uk. Medline UID: 14759362 14. Ng, J. H. and Ilag, L. L. Biochips beyond DNA: technologies and applications. Biotechnol Annu Rev. 9:1-149, 2003. ADDRESS: IMI Consulting GmbH, Auf dem Amtshof 3, 30938 Burgwedel, Germany. info@imiconsulting.com. Medline UID: 14650926 15. Pritsker, M.; Liu, Y. C.; Beer, M. A.Tavazoie, S. Whole-genome discovery of transcription factor binding sites by network-level conservation. Genome Res. 14:99-108, 2004. ADDRESS: Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA. Medline UID: 14672978 16. Radonic, A.; Thulke, S.; Mackay, I. M.; Landt, O.; Siegert, W.Nitsche, A. Guideline to reference gene selection for quantitative real-time PCR. Biochem Biophys Res Commun. 313:856-62, 2004. ADDRESS: Charite-Campus Charite Mitte, II. Medizinische Klinik mit Schwerpunkt Onkologie und Hamatologie, Humboldt Universitat, Berlin, Germany. Medline UID: 14706621 17. Rook, M. S.; Delach, S. M.; Deyneko, G.; Worlock, A.Wolfe, J. L. Whole genome amplification of DNA from laser capture-microdissected tissue for high-throughput single nucleotide polymorphism and short tandem repeat genotyping. Am J Pathol. 164:23-33, 2004. ADDRESS: Nuvelo Incorporated, Cambridge, Massachusetts, USA. Medline UID: 14695315 18. Zhang, H.; Chen, H. T.Glisin, V. Isolation of DNA-free RNA, DNA, and proteins by cesium trifluoroacetate centrifugation. Biochem Biophys Res Commun. 312:131-7, 2003. ADDRESS: Nuvelo Inc., 675 Almanor Ave., Sunnyvale, CA 94085, USA. Medline UID: 14630030 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o U.S. PIG GENOME COORDINATION PROJECT - sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/