From crittend@itis.com Fri Jan 14 15:35:31 2005 Date: Thu, 13 Jan 2005 16:17:46 -0600 From: Lyman/Margaret Crittenden To: Multiple Recipients of Subject: January, 2005 Genomics References Resent-Date: 13 Jan 2005 22:27:35 -0000 Resent-From: angenmap@genome.ansci.iastate.edu Resent-cc: recipient list not shown: ; [ AnGenMap Discussion Mailing List - Mail distributed to 1114 members ] [ INFO: http://www.genome.iastate.edu/community/discuss.html ] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ JOURNAL REFS. (GENOMICS METHODS AND REVIEWS) NLM 1/05 These references can be downloaded into Refernce Manger or Procite by going to:http://www.genome.iastate.edu/ftp/ref/ 1. Bibikova, M.; Talantov, D.; Chudin, E.; Yeakley, J. M.; Chen, J.; Doucet, D.; Wickham, E.; Atkins, D.; Barker, D.; Chee, M.; Wang, Y.Fan, J. B. Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays. Am J Pathol. 165:1799-807, 2004. ADDRESS: Genetic Analysis, Illumina, Inc., 9885 Towne Center Drive, San Diego, CA 92121, USA. Medline UID: 15509548 2. Bibikova, M.; Yeakley, J. M.; Chudin, E.; Chen, J.; Wickham, E.; Wang-Rodriguez, J.Fan, J. B. Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis. Clin Chem. 50:2384-6, 2004. ADDRESS: Illumina, Inc., San Diego, CA 92161, USA. Medline UID: 15563488 3. Burren, O. S.; Healy, B. C.; Lam, A. C.; Schuilenburg, H.; Dolman, G. E.; Everett, V. H.; Laneri, D.; Nutland, S.; Rance, H. E.; Payne, F.; Smyth, D.; Lowe, C.; Barratt, B. J.; Twells, R. C.; Rainbow, D. B.; Wicker, L. S.; Todd, J. A.; Walker, N. M.Smink, L. J. Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. Hum Genomics. 1:98-109, 2004. ADDRESS: Cambridge Institute for Medical Research, University of Cambridge, Wellcome Trust/MRC Building, Addenbrooke's Hospital, Cambridge, CB2 2XY, UK. Medline UID: 15601538 4. Hamet, P. and Tremblay, J. Novel genetic approaches to the resolution of complex diseases. Cas Lek Cesk. 143:651-6; discussion 656, 2004. ADDRESS: Research Centre, Centre hospitalier de l'Universite de Montreal (CHUM) Montreal, Quebec, Canada. Medline UID: 15584612 5. Lin, Z. and Altman, R. B. Finding haplotype tagging SNPs by use of principal components analysis. Am J Hum Genet. 75:850-61, 2004. ADDRESS: Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA. Medline UID: 15389393 6. Maley, D.; Mei, J.; Lu, H.; Johnson, D. L.Ilyin, S. E. Multiplexed RT- PCR for high throughput screening applications. Comb Chem High Throughput Screen. 7:727-32, 2004. ADDRESS: Johnson & Johnson Pharmaceutical Research & Development, Spring House, PA 19477, USA. Medline UID: 15578934 7. Nelson, D. R. and Nebert, D. W. The truth about mouse, human, worms and yeast. Hum Genomics. 1:146-9, 2004. ADDRESS: Department of Molecular Sciences and The UT Center of Excellence in Genomics and Bioinformatics, University of Tennessee, Memphis, Tennessee 38163, USA. Medline UID: 15601543 8. Quere, R.; Manchon, L.; Lejeune, M.; Clement, O.; Pierrat, F.; Bonafoux, B.; Commes, T.; Piquemal, D.Marti, J. Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression. Nucleic Acids Res. 32:e163, 2004. ADDRESS: Institut de Genetique Humaine, UPR CNRS 1142, 141 rue de la Cardonille, 34396 Montpellier, France. Medline UID: 15561998 9. Rees, C. A.; Demeter, J.; Matese, J. C.; Botstein, D.Sherlock, G. GeneXplorer: an interactive web application for microarray data visualization and analysis. BMC Bioinformatics. 5:141, 2004. ADDRESS: Dept. of Genetics, 300 Pasteur Drive, Stanford University Medical School, Stanford, CA 94305-5120, USA. rees@genome.stanford.edu . Medline UID: 15458579 10. Sellick, G. S.; Longman, C.; Tolmie, J.; Newbury-Ecob, R.; Geenhalgh, L.; Hughes, S.; Whiteford, M.; Garrett, C.Houlston, R. S. Genomewide linkage searches for Mendelian disease loci can be efficiently conducted using high-density SNP genotyping arrays. Nucleic Acids Res. 32:e164, 2004. ADDRESS: Section of Cancer Genetics, Institute of Cancer Research, Sutton, SM2 5NG, UK. Medline UID: 15561999 11. Silva, A. P.; De Souza, J. E.; Galante, P. A.; Riggins, G. J.; De Souza, S. J.Camargo, A. A. The impact of SNPs on the interpretation of SAGE and MPSS experimental data. Nucleic Acids Res. 32:6104-10, 2004. ADDRESS: Laboratory of Molecular Biology, Ludwig Institute for Cancer Research, 01509-010, Sao Paulo, SP, Brazil. Medline UID: 15562001 12. Takatsu, K.; Yokomaku, T.; Kurata, S.Kanagawa, T. A FRET-based analysis of SNPs without fluorescent probes. Nucleic Acids Res. 32:e156, 2004. ADDRESS: Kankyo Engineering Co., Ltd, 2-1-38 Shiohama, Kisarazu, Chiba 292-0838, Japan. Medline UID: 15534363 13. Varma, S. and Simon, R. Iterative class discovery and feature selection using Minimal Spanning Trees. BMC Bioinformatics. 5:126, 2004. ADDRESS: Biometric Research Branch, National Cancer Institute, Rockville, USA. varmas@mail.nih.gov. Medline UID: 15355552 14. Wakai, J.; Takagi, A.; Nakayama, M.; Miya, T.; Miyahara, T.; Iwanaga, T.; Takenaka, S.; Ikeda, Y.; Amano, M.Urata, T. A novel method of identifying genetic mutations using an electrochemical DNA array. Nucleic Acids Res. 32:e141, 2004. ADDRESS: TUM Gene, Inc., 3-1 Kazusa-Koito Kimitsu, Chiba 292-1149 Japan. Medline UID: 15498924 15. Wang, J. and Kraemer, E. GFPE: gene-finding program evaluation. Bioinformatics. 19:1712-3, 2003. ADDRESS: Computer Science Department, The University of Georgia, Athens, GA 30602, USA. Medline UID: 15593401 16. Ying, S. Y. and Lin, S. L. Intron-derived microRNAs--fine tuning of gene functions. Gene. 342:25-8, 2004. ADDRESS: Department of Cell and Neurobiology, Keck School of Medicine, BMT-401, University of Southern California, 1333 San Pablo Street, Los Angeles, CA 90033-9112, USA. sying@usc.edu. Medline UID: 15527961 17. Zhang, X.; Roeder, K.; Wallstrom, G.Devlin, B. Integration of association statistics over genomic regions using Bayesian adaptive regression splines. Hum Genomics. 1:20-9, 2003. ADDRESS: Department of Statistics, Carnegie Mellon University, Pittsburg, PA 15213, USA. Medline UID: 15601530 ********************************************************************** Margaret and Lyman Crittenden e-mail: crittend@itis.com 8550 Highway 19 Phone: 608-798-0791 Cross Plains, WI 53528 *********************************************************************** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -o NAGRP BIOINFORMATICS COORDINATION PROJECT - Sponsored by USDA/CSREES -o WEB: http://www.genome.iastate.edu/