Causal Inference of QTL Networks

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Documentation for package ‘qtlnet’ version 0.9.3

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bic.join Pre-compute BIC values for qtlnet sampling.
bic.qtlnet Pre-compute BIC values for qtlnet sampling.
c.qtlnet Pre-compute BIC values for qtlnet sampling.
check.qtlnet summary of model average network and posterior table
graph.qtlnet qtlnet plot using igraph
group.qtlnet Determine and group node-parent combinations.
igraph.qtlnet qtlnet plot using igraph
init.qtlnet Sample genetic architecture and QTL network
loci.qtlnet QTL architecture per node as list
mcmc.qtlnet Sample genetic architecture and QTL network
parallel.qtlnet Code to parallelize use of qtlnet
parents.qtlnet Determine and group node-parent combinations.
plot.qtlnet qtlnet plot using igraph
print.qtlnet summary of model average network and posterior table
print.summary.qtlnet summary of model average network and posterior table
Pscdbp Cross and qtlnet objects with Ghazalpour et al. (2006) data. Only 13 phenotypes are included.
Pscdbp.bic Pre-compute BIC values for qtlnet sampling.
Pscdbp.qtlnet Cross and qtlnet objects with Ghazalpour et al. (2006) data. Only 13 phenotypes are included.
qtlnet Sample genetic architecture and QTL network
Rgraphviz.qtlnet qtlnet plot using Rgraphviz
size.qtlnet Determine and group node-parent combinations.
summary.parents.qtlnet Determine and group node-parent combinations.
summary.qtlnet summary of model average network and posterior table
write.qtlnet write qtlnet as text file