Software for Genomic Data Analysis
Many good software modules for statistical analysis of genomic data
are offered as open source (free but copyright protected). The main
platforms (e.g. application software) for these are R (free, open source) and MatLab (commercial). Both R and
MatLab are available on UNIX/Linux, Windows (95/98/NT4/2000/ME on
Intel-type machines), and MacOS (7.6 or later for MatLab, 8.6 or later
for R). Below are some highlights. Follow links to find other modules
Many sites have software and data on the same page. Check our Genomic Data page.
Microarray analysis software has been developed under the R System,
which is freely available for Linux, Windows and Mac OSX. See other
software, data and related links at GEDA.
- Adaptive Gene Picking for Microarray Expression Data Analysis
(pickgene package for analysis used in Lin et al. (2003)): now available
directly from BioConductor
(Terry Speed's group)
Return to Statistical Genomics Page