Systems Genetics Analysis Platform

• Attie Bioinformatics Wiki
• Center for High Throughput Computing: CHTC SOAR | Stat SOAR | MySoar
• Ruby on Rails Prototype of New Site
• Current Site
• GenomeSpace (Early Adopters)
• Molecular Libraries Program (MLP)
• Library of Integrated Network-based Cellular Signatures (LINCS)
• Science Moving Towards Research Translation and Therapy (SMARTT)

• R/qtlnet package
• Cytoscape Information
• NetCDF Information
• Bioconductor sequence discussion group
• Bioconductor workshops
• Revolution Analytics (bringing high performance & productivity to R)
• Overview of Bioconductor (Martin Morgan)
• Analyzing moderately large data sets (Tom Lumley)
• Deepayan Sarkar message about interval data
• ChipSeq package

• Mendeley Research Management Tool
• R ideas for bioinformatics
  • Ken Rice & Tom Lumley's SISG Courses:
    • Computing for Statistical Genetics
    • Advanced R Programming for Bioinformatics
  • Tom Lumley's UW-Seattle Short Course on R
  • Robert Gentleman (2008) Bioinformatics with R. Chapman & Hall/CRC. ISBN 1-420-06367-7. R Publications,

• Version Control System (GIT)
  • GIT Home & Documentation
  • RefCardz: Getting Started with GIT
  • GIThub
    • Karl Broman
    • Brian Yandell
    • git-clone git://github.com/kbroman/qtl
  • ProGIT book