Genetics/Botany 629

Evolutionary Genetics

Fall 2011 Notes

Date	Topic	Slides	Notes
Sept. 8	Trees	lec1.pdf	outline1.pdf
Sept. 13	Parsimony	[1] [2] [4]	outline2.pdf
Sept. 15, 20	Molecular Evolution	[1] [2] [4]	outline3.pdf outline4.pdf
Sept. 22, 27	Distance Methods	[1] [2] [4]	outline5.pdf
Sept. 29 - Oct. 4	Maximum Likelihood/Bootstrap	[1] [2] [4]	outline6.pdf
Oct. 6	Bayesian Phylogenetics/MCMC/Quiz2	[1] [2] [4]

Homework Assignments

Problems	Brief Solutions
Assignment #1
Assignment #2	Solution #2
Assignment #3	Solution #3

Papers

Date	Paper	Student
Sept. 20	Davis-PTRSB-2010.pdf	Daniel Spalink
Sept. 20	whales-MPE-2006.pdf	Stephanie Johnson
Sept. 27	Smith-NewPhytologist-2010.pdf	Frances Goglio
Sept. 27	bayes-mammal-Murphy-etal-Science.pdf	Kristen Lee
Oct. 4	Data Analysis (method comparison)	Elizabeth Georgian
Oct. 4	Bird Phylogeny Data Analysis (method comparison) Bird Phylogeny Paper	Fan Huan
Oct. 4	HIV Evolution	Wellington Amaral
Oct. 4	Origin of Polar Bears	Haolin Xu

2009 Quiz and Solution

Quiz	Brief Solutions
Quiz #1	Solution #1
Quiz #2	Solution #2