2024
Chung, M.K., Das, S., Ombao, H., 2024 Topological data analysis of functional human brain networks, Foundations of Data Science, in press, arXiv:2210.09092Chung, M.K., Huang, S.G., Carroll, I.C., Calhoun, V.D., Goldsmith, H.H. 2024 Persistent homological statespace estimation of functional human brain network at rest, PLOS Computational Biology, in press, arXiv:2201:00087
Chung, M.K., Azizi, T., Hanson, J., Alexander, A., Davidson, R.J. and Pollak, S. 2024 Altered topological structure of the brain white matter in maltreated children through topological data analysis. Network Neuroscience, in press, arXiv:2304.05908.
2023
ElYaagoubi, A.B., Chung, M.K., Ombao, H. 2022 Topological data analysis for multivariate time series data, Entropy 25:11, 2023 arXiv:2204.13799
ElYaagoubi, A.B., Chung, M.K., Ombao, H. 2023 Statistical inference for dependence networks in topological data analysis, Frontiers in Artificial Intelligence 6:1293504
Huang, J., Chung, M.K., Qiu, A. 2023 Heterogeneous graph convolutional neural network via Hodge Laplacian for brain functional data. Information Processing in Medical Imaging (IPMI) 13939:278290 (selected for oral, selected as the 2nd best paper).
Anand, D.V., Chung, M.K. 2023 HodgeLaplacian of brain networks, IEEE Transactions on Medical Imaging 42:15631473
Songdechakraiwut, T. Chung, M.K. 2023 Topological learning for brain networks, Annals of Applied Statistics 17:403433, MATLAB
Chung, M.K., Hanson, J.L., Davidson, R.J., Pollak, S.D. 2023 Discussion of paper LESA: longitudinal elastic shape analysis of brain subcortical structures. Journal of American Statistical Association (JASA), 118:2021
Das, S., Anand, D.V., Chung, M.K. 2023 Topological data analysis for human brain networks through order statistics Plos One 18:e0276419
2022
Dakurah, S, Anand, D.V., Chen, Z., Chung, M.K. Modelling cycles in brain networks with the Hodge Laplacian (paper award), Medical Image Computing and Computer Assisted Intervention (MICCAI) 13431:326225Bourakna, A.E.Y., Chung, M.K., Ombao, H. 2022 Modeling and simulating dependence in networks using topological data analysis arXiv:2209.10416
Chung, M.K., Chen, Z. 2022 Embedding of functional human brain networks on a sphere, arXiv:2204.03653
Wang, Y., Chung, M.K., Fridriksson, J. 2022 Spectral permutation test on persistent diagrams, International conference on acoustics,speech and signal processing (ICASSP) 14611465
Chung, M.K., Huang, S.G., Carroll, I.C., Calhoun, V.D., Goldsmith, H.H. 2022 Wasserstein graph clustering in determining the genetic contribution of state changes in rsfMRI, Annual Meeting of the Organization for Human Brain Mapping (OHBM)
Xu, F., Garai, S., Chung, M.K., Caciagli, L., Saykin, A.J., bassett, D.S., Shen, L. 2022 Identifying topological changes of structural connectome in MCI and AD through persistent homology, Annual Meeting of the Organization for Human Brain Mapping (OHBM)
2021
Chung, M.K., Ombao, H. 2021, Discussion of 'event history and topological data analysis'. Biometrika 108:775778Chung, M.K., Ombao, H. 2021 Lattice paths for persistent diagrams. Lecture Notes in Computer Science 12929:7786 arXiv:2105:00351 MATLAB (Plenary talk in MICCAI workshop)
Songdechakraiwut, T., Shen, L., Chung, M.K. 2021 Topological learning and its application to multimodal brain network integration, Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS 12902:166176 MATLAB
Huang, S.G., Chung, M.K., Qiu, A, ADN Initiative 2021 Revisiting convolutional neural network on graphs with polynomial approximations of LaplaceBeltrami spectral filtering, Neural Computing and Applications, 33:1369313704 arXiv:2010.1326
Huang, S.G., Chung, M.K., Qiu, A, ADN Initiative 2021 Fast mesh data augmentation via Chebyshev polynomial of spectral filtering, Neural Networks 143:198208 arXiv:2010.02811
Chung, M.K., Smith, A., Shiu, G. 2021 Reviews: topological distances and losses for brain networks, arXiv:2102.08623
2020
Chung, M.K., Huang, S.G., Songdechakraiwut, T., Carroll, I.C., Goldsmith, H.H. 2020 Statistical analysis of dynamic functional brain networks in twins, arXiv 1911.02731 MatlabSongdechakraiwut, T. Chung, M.K. 2020 Dynamic topological data analysis for functional brain signals, IEEE International Symposium on Biomedical Imaging (ISBI) Workshop 14 Shorter abstract
Kulkarni, A.P., Chung, M.K., Bendlin, B.B., Prabhakaran, V. 2020 Investigating heritability across resting state brain networks via heat kernel smoothing on persistence diagrams, IEEE International Symposium on Biomedical Imaging (ISBI) workshop 14.
Huang,
S.G., Lyu, I., Qiu, A., Chung, M.K. 2020. Fast
polynomial approximation of heat
kernel convolution on manifolds and
its application to brain sulcal and
gyral graph pattern analysis,
IEEE Transactions on Medical Imaging 39:22012212
arXiv
1911.02721
Grisenko,
A., Lindquist, M., Chung, M.K. 2020 Twin
classification in restingstate brain
connectivity, IEEE
International
Symposium on
Biomedical Imaging
(ISBI), 13941394,
Extended
version: arXiv:1807.00244
Chung, M.K., Adluru, N., Vorperian, H.K. 2020 Kernel regression on manifolds and its application to modeling disconnected anatomic structures, Statistical Methods in Biomedical Research, 235260, Springer Nature arXiv:1601.03474 (invited paper)
Huang, S.G., Samdin, S.B., Ting, C.M., Ombao, H., Chung, M.K. 2020 Statistical model for dynamicallychanging correlation matrices with application to brain connectivity. Journal of Neuroscience Methods 331:108480 arXiv:1812.10050 (invited review)
2019
Chung, M.K., Xie, L., Huang, S.G., Wang, Y., Yan, J., Shen, L. 2019. Rapid Acceleration of the permutation test via transpositions, International Workshop on Connectomics in NeuroImaging, Lecture Notes in Computer Science 11848:4253. A different version arXiv:1812.06696(selected for oral)
Huang, S.G., Lyu, I., Qiu, A., Chung, M.K. 2019. Fast polynomial approximation to heat diffusion in manifolds, Medical Image Computing and Computer Assisted Intervention (MICCAI) 11767:4856
Lee, H., Chung, M.K., Kang, H., Choi, H., Huh, Y., Ha, S., Kim, E., Lee, D.S. 2019 Coidentifciation of grouplevel hole structures in brain networks via Hodge Laplacian, Medical Image Computing and Computer Assisted Intervention (MICCAI) 11767:674682
Chung, M.K. 2019 Brain Network Analysis, Cambridge University Press
Huang, S.G., Chung, M.K., Carroll, I.C., Goldsmith, H.H. 2019 Dynamic functional connectivity using heat kernel. IEEE Data Science Workshop (DSW), 222226 Extended version
arXiv 1911.02731 MATLAB
Chung, M.K., Wang, Y. 2019. Heat kernel smoothing in irregular domains, Lecture Note Series, IMS, NUS Mathematics of Shapes and Applications 181210 MATLAB (invited paper)
Wang, Y., Ombao, H., Chung, M. 2019. Statistical persistent homology of brain signals, IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) 11251129
Chung, M.K., Lee, H. Ombao. H., Solo, V. 2019 Exact topological inference of the restingstate brain networks in twins, Network Neuroscience 3:674694 MATLAB (invited paper)
Chung, M.K., Huang, S.G., Gritsenko, A., Shen, L., Lee, H. Statistical inference on the number of cycles in brain networks. IEEE International Symposium on Biomedical Imaging (ISBI) 113116
MATLAB A different version arXiv 1809.03878
Huang, S.G., Gritsenko, A., Lindquist, M.A., Chung, M.K. 2019. Circular Pearson correlation using cosine series expansion. IEEE International Symposium on Biomedical Imaging (ISBI) 17741777
Lee, H., Chung, M.K., Choi, H., Kang, H., Ha, S., Kim, Y.K., Lee, D.S. 2019. Harmonic holes as the submodules of brain network and network dissimilarity. Workshop on Computational Topology in Image Context, Lecture Notes in Computer Science 11382:110122, arXiv:1811:04355
Xing,
M., Lee, H., Morrissey, Z., Chung, M.K.,
Phan, K.L., Klumpp, H., Leow, A., Ajilore,
O. 2019 Altered
dynamic electroencephalography
statespace features of emotion
regulation in social anxiety. NeuroImage,
196:338349
2018
Chung, M.K., Luo, Z., Adluru, A., Alexander, A.L., Richard, D.J., Goldsmith, H.H. 2018 Heritability of hierarchical structural brain network. IEEE Engineering in Medicine and Biology Society (EMBC) doi.org/10.1101/209635, 554557Chung, M.K., Wang, Y., Wu, G. 2018 Discrete heat kernel smoothing in irregular image domains, IEEE Engineering in Medicine and Biology Society (EMBC) 51015104 (selected for oral)
arXiv:1710.07849
Lee, M.H., Kim, D.Y., Chung, M.K., Alexander, A.L., Davidson, R.J. 2018 Topological properties of the brain network constructed using the epsilonneighbor method in patients with autism, IEEE Transactions on Biomedical Engineering, 65:23232333 (selected for cover art)
Wang, Y., Ombao, H., Chung, M.K. 2018 Topological data analysis of singletrial electroencephalographic signals. Annals of Applied Statistics, 12:15061534 (received ENAR paper award)
Chung, M.K., Luo, Z., Leow, A.D., Alexander, A.L., Richard, D.J., Goldsmith, H.H. 2018 Exact Combinatorial Inference for Brain Images, Medical Image Computing and Computer Assisted Intervention (MICCAI), 11070:629637
Morrissey, Z.D., Zhan, L., Lee, H., Keiriz, J.J.G., Forbes, A.G., Ajilore, O., Leow, A.D., Chung, M.K. 2018 Phaseangle spatial embedding (PhaSE) as a maximum mean discrepancy method for studying the human functional connectome, Medical Image Computing and Computer Assisted Intervention (MICCAI), LNCS 11072:367374
Solo, V., Poline, J.B., Lindquist, A.L., Simpson, S.L., Bowman, F.D., Chung, M.K., Cassidy, B. 2018 Connectivity in fMRI: blind spots and reakthroughts. IEEE Transactions on Medical Imaging 37:15371550 (invited paper)
Lee, H., Chung, M.K., Kang, H., Choi, H., Kim, Y.K., Lee, D.S. 2018 Abnormal hole detection in brain connectivity by kernel density of persistence diagram and Hodge Laplacian, IEEE International Symposium on Biomedical Imaging (ISBI) 2023 (selected for oral)
Chung, M.K. 2018 Statistical challenges of big brain network data, Statistics & Probability Letters, 136:7882 (invited paper) arXiv:1709:09645
Chuang, Y.J., Doherty, B.M., Adluru, N., Chung, M.K., Vorperian, H.K. 2018 A novel registrationbased semiautomatic mandible segmentation pipeline using computed tomography images to study mandibular development. Journal of Computer Assisted Tomography. 42:306316
2017
Chung, M.K. 2017 Introduction to random fields, arXiv:2007.09660
Zhang, L., Jenkins, L.M., WOlfson, O.E., GadElkarim, J.J., Nocito, K., Thompson, P.M., Ajilore, O.A., Chung, M.K., Leow, A.D. 2017 The significance of negative correlations in brain connectivity. Journal of Comparative Neurology. 525:32513265 arXiv:1609.01384
Wang, Y, Chung, M.K., Dentico, D., Lutz, A., Davidson, R.J. 2017 Topological network analysis of electroencephalographic power maps, International Workshop on Connectomics in NeuroImaging, Lecture Notes in Computer Science 10511:134142
Chung, M.K. Chuang, Y.J. Vorperian, H.K. 2017. Online statistical inference for largescale binary images. Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science 10434:729736. Poster
Chung, M.K., Hanson, J.L., Adluru, Aleander, A.L., Davidson, R.J., Pollak, S.D. 2017 Integrative structural brain network analysis in diffusion tensor imaging, Brain Connectivity 7:331346, bioRxiv 129015
 Chung, M.K., Vilalta, V.G., Lee, H., Rathouz, P.J.,
Lahey, B.B.,
Zald, D.H.
2017 Exact
topological
inference for
paired brain
networks via
persistent
homology.
Information
Processing in
Medical
Imaging (IPMI)
10265:299310
(selected
for oral, 20% rate) MATLAB.
Extended version: arXiv:1509.04771
PMCID: PMC5654491
 Chung, Hanson, J.L., Adluru, Aleander, A.L., Davidson, R.J., Pollak, S.D.2017. Exponential decay law for the structural brain network of maltreated children. Proceeding of International Society of Magnetic Resonance in Medicine (ISMRM) 25:3493
 Chung, M.K., Vilalta, V.G., Rathouz, P.J., Lahey, B.B., Zald, D.H. 2017 Hyper network analysis on paired images. Proceeding of International Society of Magnetic Resonance in Medicine (ISMRM) 25:0958 Lecture (selected for oral)

Lee, H., Kang, H., Chung, M.K., Lim, S., Kim, B.N., Lee, D.S. 2017 Integrated multimodal network approach to PET and MRI based on multidimensional persistent homology Human Brain Mapping 38:13871402. arXiv:1410.4620
Yoo, K., Lee, P., Chung, M.K., Sohn, W.S., Chung, S.J., Na, D.L., Ju, D., Jeong, Y. 2017 Degreebased statistic and center persistency for brain connectivity analysis. Human Brain Mapping 38:165181
2016
Chung, M.K., Hanson, J.L., Pollak, S.D. 2016. Statistical analysis on brain surfaces, Handbook of Neuroimaging Data Analysis. 233262 (invited paper)
Wang, Y., Chung, M.K., Vorperian, H.K. 2016. Composite growth model applied to human oral and pharyngeal structures and identifying the contribution of growth types. Statistical Methods in Medical Research. 25:19751990

Lee, H., Chung, M.K., Kang, H., Kim, E., Huh, Y., Hahm, J., Kim, Y.K., Lee, D.S. 2016 Shape variability in the dynamics of restingstate functional network and relationship with age. 2016. Organization for Human Brain Mapping (OHBM) annual meeting. poster. (selected for oral)

Chung, M.K., Vilalta, V.G., Rathouz, P.J., Lahey, B.B., Zald, D.H. 2016 Heritability of largescale functional brain networks. Organization for Human Brain Mapping (OHBM). Lecture, Poster
(invited talk)

2015
Chung, M.K., Hanson, J.L., Ye, J., Davidson, R.J. Pollak, S.D. 2015 Persistent homology in sparse regression and its application to brain morphometry. IEEE Transactions on Medical Imaging, 34:19281939 arXiv:1409.0177 PMCID: PMC4629505
 Kim, W.H., Bendlin, B.B., Chung, M.K., Johnson, S.C., Singh, V. 2015. Statistical inference models for image datasets with systematic variations, Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 47954803
 Kim, W.H., Adluru, N., Chung, M.K., Okonkwo, C.O., Johnson, S.C., Bendlin, B.B., Singh, V. 2015. Multiresolution statistical analysis of brain connectivity graphs in preclinical Alzheimerâ€™s disease. NeuroImage 118:103117
 Wang, Y., Chung, M., Bachhuber, D.R.W., Schaefer, S.M., van Reekum, C.M., Davidson, R.J. 2015 LARS network filtration in the study of EEG brain connectivity, IEEE 12th International Symposium on Biomedical Imaging (ISBI) 3033
 Wang, Y., Ombao, H., Chung, M.K. 2015 Topological epilepsy seizure detection in electroencephalographic signals, IEEE 12th International Symposium on Biomedical Imaging (ISBI) 351354 (selected for oral)
 Kim, W.H., Singh, V., Chung, M.K., Adluru, N., Bendlin, Johnson, S.C. 2015 Multiresolution statistical analysis on graph structured data in neuroimaging EEE 12th International Symposium on Biomedical Imaging (ISBI) 15481551 (selected for oral)
 Lee, M.H., Kim, D.Y., Lee, S.H., Kim, J.U., Chung, M.K. 2015. Comparisons of topological properties in autism for the brain network construction methods, Proceedings of SPIE Medical Imaging vol. 9413, 941323. (poster award)
Chung, M.K., Qiu, A.,
Seo S. Vorperian, H.K. 2015. Unified
heat kernel regression for diffusion,
kernel smoothing and wavelets on manifolds
and its application to mandible growth
modeling in CT images, Medical
Image Analysis. 22:6376
arXiv:1409.6498
 Hosseinbor, A.P., Chung, M.K., Schaefer, S.M., van Reekum, PerchkeSchmitz L., Sutter, M., Alexander, A.L., Davidson, R.J. 2015 4D hyperspherical harmonic (HyperSPHARM) representation of surface anatomy: a holistic treatment of multiple disconnected anatomical structures, Medical Image Analysis 22:89101
 Hosseinbor, A.P., Chung, M.K., Wu, Y.C., Bendlin, B.B., Alexander, A.L. 2015 A 4D hyperspherical interpretation of qspace, Medical Image Analysis 21:1528
 Qiu, A., Lee, A., Tan.M., Chung, M.K. 2015. Manifold learning on brain functional networks in aging, Medical Image Analysis 20:5260
2014
 Ryu, W.S., Woo, S.H., Schellingerhout, D., Chung, M.K. et al. 2014 Grading and interpretation of white matter hyperintensities using statistical maps, Stroke 45:35673575
 Khalid, A., Kim, B.S., Chung, M.K., Ye, J.C., Jeon, D. 2014. Tracing the evolution of multiscale functional notworks in a mouse model of depression using persistent brain network homology, NeuroImage 101:351363
 Chung, M.K., Schaefer, S.M., van Reekum, C. M., Schmitz, L.P., Sutterer, M., Davidson, R.J. 2014. A unified kernel regression for diffusion wavelets on manifolds detects agingrelated changes in the amygdala and hippocampus, 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science(LNCS) 8674:791298
 Hosseinbor, A.P., Kim, W.H., Adluru, N., Acharya, A., Vorperian, H.K., Chung, M.K. 2014. The 4D hyperspherical diffusion wavelet: a new method for the detection of localized anatomical variation, 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science(LNCS) 8675:6572
 Lee, H., Chung, M.K., Kang, H., Lee, D.S. 2014. Hole detection in metabolic connectivity of Alzheimer's disease using kLaplacian, 17th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science(LNCS) 8675:297304

 Kim, H.J., Adluru, N., Collins, M.D., Chung, M.K., Bendlin, B.B., Johnson, S.C., Davidson, R.J., Singh, V. 2014. Multivariate general linear models (MGLM) on Riemannian manifolds with applications to statistical analysis of diffusion weighted Images, The IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 27052712
 Du, J., Hosseinbor, A.P., Chung, M.K., Bendlin, B.B., Suryawanshi, G., Alexander, A.L., Qiu, A. 2014. Diffeomorphic metric mapping and probabilistic atlas generation of hybrid diffusion imaging based on BFOR signal basis, Medical Image Analysis 18:10021014
 Kim, W.H., Singh, V., Chung, M.K., Hinrichs, C., Pachauri, D., Okonkwo, O.C., Johnson, S.C. 2014. Multiresolution shape features via nonEuclidean wavelets: Applications to statistical analysis of cortical thickness. NeuroImage 93:107123.
 Wang, Y., Ombao, H., Chung, M.K. 2014. Persistence landscape of functional signal and its application to epileptic electroencaphalogram data, ENAR Distinguished Student Paper Award (20 awards out of 169 submissions, 11.8% rate)
 Chung, M.K., Kim, S.G., Schaefer, S.M., van Reekum, C. M., Schmitz, L.P., Sutterer, M., Davidson, R.J. 2014. Improved statistical power with a sparse shape model in detecting an aging effect in the hippocampus and amygdala, Proceedings of SPIE Medical Imaging 9034, 90340Y

2013
 Hanson, J.L., Adluru, N., Chung, M.K., Alexander, A.L., Davidson, R.J., Pollak, S.D. 2013. Early neglect is associated with alterations in white matter integrity and cognitive functioning, Child Development 84:15661578
 Kim, W.H., Adluru, N., Chung, M.K., Kumar, A., Altshuler, L., Moody, T., GadElkarim, J., Singh, V., Leow, A. 2013. Multiresolution brain network filtering and analysis via wavelets on nonEuclidean space, 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8151:643651 (acceptance 32.8%).
 Hosseinbor, A.P., Chung, M.K., Schaefer, S.M., van Reekum, C., PeschkeSchmitz, L., Sutterer, M., Alexander, A.L., Davidson, R.J. 2013. 4D Hyperspherical harmonic (HyperSPHARM) representation of multiple disconnected brain subcortical structures, 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8149:598605 (acceptance 32.8%).
 Hosseinbor, A.P., Chung, M.K., Wu, Y.C., Bendlin, B.B., Alexander, A.L. 2013. A 4D hyperspherical interpretation of qspace, 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8151:501509 (acceptance 32.8%).
 Chung, M.K., Hanson, J.L., Lee, H., Adluru, N., Alexander, A.L., Davidson, R.J., Pallak, S.D. 2013. Persistent homological approach to detecting white matter abnormality in maltreated children: MRI and DTI multimodal study. 16th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS) 8149:300307 (acceptance 32.8%).
 Kim, W.H., Chung, M.K., Singh, V. 2013. Multiresolution shape analysis via nonEuclidean wavelets: applications to mesh segmentation and surface alignment problem. Computer Vision and Pattern Recognition (CVPR) 21392146. PMCID: PMC3879264
Chung, M.K. 2013. Statistical
and Computational Methods in Brain Image
Analysis. Chapman &
Hall/CRC. DATA/MATLAB
 Du, J., Hosseinbor, A.P., Chung, M.K., Bendlin, B.B., Syryawanshi, G., Alexander. A.L., Qiu, A. 2013. Diffeomorphic metric mapping of hybrid diffusion imaging based on BFOR signal basis. Information Processing in Medical Imaging (IPMI). Lecture Notes in Computer Science (LNCS). 7917:147158.
 Whyms, B. J., Vorperian, H.K., Gentry, L. R., Schimek, E.M., and Bersu, E. T. Chung, M.K. 2013. The effect of computed tomographic scanner parameters and 3dimensional volume rendering techniques on the accuracy of linear, angular, and volumetric measurements of the mandible. Oral Surgery, Oral Medicine, Oral Pathology, and Oral Radiology Journal. 115:682691. PMCID: PMC3633147
 Hosseinbor, A.P., Chung, M.K., Wu, Y.C., Alexander, A.L. 2013. Bessel Fourier orientation reconstruction (BFOR): an analytical diffusion propagator reconstruction for hybrid diffusion imaging and computation of qspace indices, NeuroImage 64:650670.
2012
Chung, M.K. 2012 Gaussian
kernel smoothing arXiv:2007.09539
Chung, M.K. 2012. Computational
Neuroanatomy: The Methods, World
Scientific Publishing, Singapore
 Chung, M.K., Lee, H., Arnold, A. 2012. Persistent homological structures in compressed sensing and sparse likelihood, NIPS Workshop on Algebraic Topology and Machine Learning.
 Lee, H., Kang, H., Chung, M.K., Kim, B.N., Lee, D.S. 2012 Weighted functional brain network modeling via network filtration, NIPS Workshop on Algebraic Topology and Machine Learning.
 Kim, W.H., Pachauri, D., Hatt, C., Chung, M.K., Johnson, S.C., Singh, V. 2012. Wavelet based multiscale shape features on arbitrary surfaces for cortical thickness discrimination, Advances in Neural Information Processing Systems (NIPS) (acceptance 25.2%)
 Hosseinbor, A.P., Chung, M.K., Wu, Y.C., Fleming, J.O., Field, A.S., Alexander, A.L. 2012. Extracting quantitative measures from EAP: a small clinical study using BFOR. 15th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 7511:280287 (acceptance 32%)
 Hanson, J.L., Chung, M.K., Avants, B.B., Rudolph, K.D., Shirtcliff, E.A., Gee, J.C., Davidson, R.J., Pollak, S.D. 2012. Structural variations in prefrontal cortex mediate the relationship between early childhood stress and spatial working memory, The Journal of Neuroscience 32:79177925.
Lee, H., Kang, H.K., Chung, M.K., Kim,
B.N., Lee, D.S. 2012. Persistent
brain network homology from the
perspective of dendrogram, IEEE
Transactions on Medical Imaging. 31:22672277.
Different version Technical
Report 228.
 Lee, H., Chung, M.K., Kang, H., Kim, B.N., Lee, D.S. 2012. Edge selection method preserving the topological features of brain network. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 7457. Poster (selected for oral)
 Chung, M.K., Adluru, N., Lainhart, J.E., Lange, N., Alexander, A.L. 2012. Electrical Circuit model for white matter fiber tracts in diffusion tensor imaging. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 7250. Poster
 Kim, S.G., Lee, H., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2012. Agreement between the white matter connectivity based on the tensorbased morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. IEEE International Symposium on Biomedical Imaging (ISBI) 4245.
 Kim, S.G., Chung, M.K., Schaefer, S.M., van Reekum, C., Davidson, R.J. 2012. Sparse shape representation using the LaplaceBeltrami eigenfunctions and its application to modeling subcortical structures. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). 2532. (selected for oral) Matlab
2011
 Kim, S.G., Chung, M.K., Seo, S., Schaefer, S.M., van Reekum, C., Davidson, R.J. 2011. Heat kernel smoothing via LaplaceBeltrami eigenfunctions and its application to subcortical structure modeling. PacificRim Symposium on Image and Video Technology (PSIVT). Lecture Notes in Computer Science (LNCS). 7087:3647. (selected for oral) Matlab
 Adluru, N., Chung, M.K., Lange, N.T., Lainhart, J.E., Alexander, A.L. 2011. Applications of epsilon radial networks in neuroimage analyses. PacificRim Symposium on Image and Video Technology (PSIVT). Lecture Notes in Computer Science (LNCS). 7087:236247 (selected for oral).
 Gallagher, C.L., Oakes, T.R., Johnson, S.C., Chung, M.K., Holden, J.E., Bendlin, B.B., McLaren, D.G., Xu, G., Nickles, R.J., Pyzalski, R., DeJesus, O., Brown, W.D. 2011. Rate of 6[18F] fluorodopa uptake decline in striatal subregions in Parkinson's disease. Movement Disorders. 26:614620.
 Gallagher, C.L., Johnson, S.C., Bendlin, B.B., Chung, M.K., Holden, J.E., Oakes, T.R., Brooks, B.R., Konopacki, R.A., Dogan, S., Abbs, J.H., Xu, G., Nickles, R.J., Pyzalski, R.W., DeJesus, O.T., Brown, W.D. 2011. A longitudinal study of motor performance and striatal [18F] fluorodopa uptake in Parkinsonâ€™s disease, Brain Imaging and Behavior, 5:203211.
Chung,
M.K., Dalton, K.M, Kelley, D.J., Davidson,
D.J. 2011. Mapping
brainbehavior correlations in autism
using heat kernel smoothing, Quantitative
BioScience 30:7583. (invited
paper)
 Pachauri, D., Hinrichs, C., Chung, M.K., Johnson, S.C., Singh, V. and ADNI. 2011. Topologybased kernels with application to inference problems in Alzheimer's disease. IEEE Transactions on Medical Imaging. 30:17601770.
Lee, H., Chung, M.K., Kang,
H., Kim, B.N., Lee, D.S. 2011. Computing
the
shape of brain network using graph
filtration and GromovHaudorff metric.
14th
International Conference on Medical Image
Computing and Computer Assisted
Intervention (MICCAI). Lecture Notes
in Computer Science (LNCS). 6892:302309.
(selected for oral,
oral acceptance 4.15%)
 Hosseinbor, A.P., Chung, M.K., Wu, Y.C., Alexander, A.L. 2011 Bessel Fourier Orientation Reconstruction: An Analytical EAP Reconstruction using Multiple Shell Acquisitions in Diffusion MRI. 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 6892:217225. (acceptance rate 30%).
Hosseinbor,
A.P., Chung, M.K., Wu, Y.C., Alexander,
A.L. 2011 Bessel
Fourier orientation reconstruction: Using
heat equation & multiple shell
acquisitions to reconstruct diffusion
propagator. Proceeding of
International Society of Magnetic Resonance
in Medicine (ISMRM) 19:1927
 Chung, M.K., Seo, S., Adluru, N., Vorperian, H.K. 2011 Hot spots conjecture and its application to modeling tubular structures. 2nd International Workshop on Machine Learning in Medical Imaging (MLMI). Lecture Notes in Computer Science (LNCS). 7009:225232 (selected for oral). MATLAB
 Vorperian, H.K., Wang, S., Schimek, E.M., Durtschi, R.B., Kent, R.D., Gentry, L.R., Chung, M.K. 2011. Developmental sexual dimorphism of the oral and pharyngeal portions of the vocal tract: An imaging study. The Journal of Speech, Language and Hearing Research. 54:9951010. (received Editor's Award for the best paper in 2011) PMCID: PMC3135757
Lee, H., Lee, D.S., Kang, H., Kim, B.N., Chung, M.K. 2011. Sparse brain network recovery under compressed sensing. IEEE Transactions on Medical Imaging. Special Issue on Compressed Sensing. 30:11541165.
 Lee, H., Chung, M.K., Kang, H., Kim, B.N., Lee, D.S. 2011. Persistent network homology from the perspective of dendrograms. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). Poster (selected for oral, NIH travel award)
 Chung, M.K. Hanson, J.L., Davidson, R.J., Pollak, S.D. 2011. Effect of family income on hippocampus growth: longitudinal study. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 2697. Poster
 Lee, H., Chung, M.K., Kang, H., Kim, B.N., Lee, D.S. 2011. Brain network from sparse and topological point of view. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). Poster
 Seo, S.,
Chung, M.K., Dalton, K.M., Davidson, R.J.
2011. Multivariate
cortical
shape
modeling based on sparse representation.
17th
Annual Meeting of the Organization for
Human Brain Mapping (OHBM). Poster
 Hahm, J., Chung, M.K., Kang, H., Lee, S.K., Lee D.S. 2011. Voxelbased network using epsilon neighbor with regional constratint on medial temporal lobe epilepsy. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM).
 Kim, S.G., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2011. White matter structural connectivity without diffusion tensor imaging. 17th Annual Meeting of the Organization for Human Brain Mapping (OHBM). Poster
 Chung, M.K., Lee, H., Kim, P.T., Ye, J.C. 2011. Sparse topological data recovery in medical images. IEEE International Symposium on Biomedical Imaging (ISBI). 11251129. (invited paper)
 Seo, S., Chung, M.K. 2011. LaplaceBeltrami eigenfunction expansion of cortical manifolds. IEEE International Symposium on Biomedical Imaging (ISBI) 372375. (NIH travel award)
 Kim, S.G., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2011. Structural connectivity via the tensorbased morphometry. IEEE International Symposium on Biomedical Imaging (ISBI). 808811.
 Lee, H., Chung, M.K., Kang, H., Kim, B.N., Lee D.S. 2011. Discriminative persistent homology of brain networks. IEEE International Symposium on Biomedical Imaging (ISBI). 841844
 Lee, H., Lee, D.S., Kang, H., Kim, B.N., Chung, M.K. 2011. Sparse brain network using penalized linear regression. Proceedings of SPIE. 7965, 796517 (selected for oral)
 Chung, M.K., Adluru, N., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2011. Scalable brain network construction on white matter fibers. Proceedings of SPIE. 7962, 79624G.
 Seo, S. Chung, M.K. Voperian, H.K. 2011. Mandible shape modeling using the second eigenfunction of the LaplaceBeltrami operator. Proceedings of SPIE. 7962, 79620Z (selected for oral)
2010
Chung, M.K., Worsley, K.J., Nacewicz, B.M., Dalton, K.M., Davidson, R.J. 2010. General multivariate linear modeling of surface shapes using SurfStat. NeuroImage. 53:491505. Matlab
 Adluru, N., Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2010. Characterizing brain connectivity using Îµradial nodes: application for classifying autism. MICCAI workshop on Computational Diffusion MRI
 Hanson, J. Chung, M.K., Avants, B., Shirtcliff, E., Gee, J., Davidson, R.J. 2010. A tensorbased morphometry investigation of brain structure and behavioral risk. Journal of Neuroscience. 30:74667472
Seo, S., Chung, M.K., Voperian, H.K. 2010. Heat kernel smoothing using LaplaceBeltrami eigenfunctions. 13th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 6363:505512. (acceptance rate < 32%). Matlab
 Chung, M.K. 2010. Rsquare, The Encyclopedia of Research Design, Sage Publications. (invited paper)
 Chung, M.K. Adluru, N. Dalton, K. M., Alexander, A.L., Davidson, R.J. 2010. Characterization of structural connectivity in autism using graph networks with DTI. 16th Annual Meeting of the Organization for Human Brain Mapping. 938. (selected as eposter as one of the best abstracts)
 Kim, S.G., Chung, M.K., Hanson, J.L., Avants, B.B., Gee, J.C., Davidson, R.J., Pollak, S.D. 2010. Structural connectivity via the tensorbased morphometry. The Biannual Meeting of Korean Socieity of Human Brain Mapping. (best poster award)
Chung, M.K., Adluru, N., Lee, J.E., Lazar, M., Lainhart, J.E., Alexander, A.L., 2010. Cosine series representation of 3D curves and its application to white matter fiber bundles in diffusion tensor imaging. Statistics and Its Interface. 3:6980. PMCID: PMC3541410 Matlab
Chung, M.K., Hanson, J.L., Avants, B., Gee, J., Davidson, R.J., Pollak, S.D. 2010. Structural connectivity mapping via the tensorbased morphometry. 16th Annual Meeting of the Organization for Human Brain Mapping. 481.
 Gallagher, C.L., Johnson, S.C., Chung, M.K., Brooks, B.R., Abbs, J., Dogan, S., Bendlin, B.B., Nickles, R.J., Brown, W.D., 2010. Bulbar Function Is Correlated with Neuroimaging Outcomes in Parkinson's Disease. Annual Meeting of American Academy of Radiology. P03.169.
 Hanson,
J.L., Chung, M.K., Davidson, R.J., Pollak,
S.D. 2010. Development of the Medial
Temporal Lobe: CrossSectional &
Longitudinal Insights into Behavioral
Changes, Society
for Neurosicence Meeting.
 Hahm, J., Park, H., Kang, H., Kang, E., Kim, Y.K., Lee, S.K., Lee, J. S., Chung, M., Lee, D. S. 2010. Changs in a language network of metabolic connectivity in medial temporal lobe epilepsy on FDGPET. 16th Annual Meeting of the Organization for Human Brain Mapping. 322.
 Kim, H., Kang, E., Kang, H., Lee H.K., Lee, J. S., Chung, M. Kim, H.W., Cho, S. C., Kim, B.N., Lee, D. S. 2010. Right orbitofrontal connectivity in default mode network of children with autism spectrum disorder. 16th Annual Meeting of the Organization for Human Brain Mapping. 415.
 Yim, Y.K., Kang, H., Chung, M., Kang, E., Lee, H.K., Kim, H.W., Kim, B.N., Lee, D. S. 2010. Anatomical dysconnectivity in children with attention defit/hyperactivity disorder. 16th Annual Meeting of the Organization for Human Brain Mapping. 485.
 Kim, E., Kang, H., Chung, M., Kang, E., Lee, H.J., Song, J.J., Oh, S.H., Lee, D. S. 2010. Differences in anatomical networks between post and pre/perilingual deaf using gray matter density. 16th Annual Meeting of the Organization for Human Brain Mapping. 1529.
 Kang, H., Kim H., Kang, E., Lee, H.K., Chung, M., Lee, J. S., Kim, H.W., Cho, S. C., Kim, B.N., Lee, D. S. 2010. Differences in metabolic connectivity between atusim and attention deficit/hyperactivity disorder. 16th Annual Meeting of the Organization for Human Brain Mapping. 417.
 Hanson, J.L., Chung, M.K., Avants, B., Shirtcliff, E.A., Schlaak, M., Davidson, R.J., Pollak, S.D. 2o10. Effects of Early Deprivation and Neglect on Adolescent Brain Structure and Neuropsychological Functioning. Biennial Meeting for Society for Research on Adolescence.
2009
 Worsley, K.J., Taylor, J.E., Carbonell, F., Chung, M.K., Duerden, E., Bernhardt, B., Lyttelton, O., Boucher, M., Evans, A.C. 2009. SurfStat: A Matlab toolbox for the statistical analysis of univeriate and multivariate surface and volumetric data using linear mixed effects models and random field theory. 15th Annual Meeting of the Organization for Human Brain Mapping. 972.
 Adluru, N., Hinrichs, C., Chung, M.K., Lee, J.E., Singh, V., Erin, D.B., Lange, L.T., Lainhart, J.E., Alexander, A.L. 2009. Classification in DTI using shapes of white matter tracts. IEEE Engineering in Medicine and Biology Society (EMBC).
 Chung, M.K., Adluru, N., Lee, J.E., Lazar, M., Lainhart, J.E., Alexander, A.L. 2009. Efficient parametric encoding scheme for white matter fiber bundles. IEEE Engineering in Medicine and Biology Society (EBMC) (invited paper)
Chung, M.K., Singh, V., Kim, P.T., Dalton, K.M., Davidson, R.J. 2009. Topological characterization of signal in brain images using the minmax diagram. 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 5762:158166. (acceptance rate < 32%).
 Khan, A.R., Chung, M.K., Beg, M.F. 2009. Robust atlasbased brain segmentation using multistructure confidenceweighted registration. 12th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). (acceptance rate < 32%).
 Durtschi, R.B., Chung, D., Gentry, L.R., Chung, M.K., Vorperian, H.K. 2009. Developmental craniofacial anthropometry: assessment of race effects. Clinical Anatomy. 22:800808.
Chung, M.K., Bubenik, P., Kim, P.T. 2009. Persistence diagrams of cortical surface data. Information Processing in Medical Imaging (IPMI). Lecture Notes in Computer Science (LNCS). 5636:386397. (selected for oral, oral acceptance 17%)
 Chung, M.K., Wu, Y.C., Alexander, A.L. 2009. 3D functional representation of spasely sampled 2D cortical data. IEEE International Symposium on Biomedical Imaging (ISBI). poster
 Hinrichs, C., Singh, V., Mukherjee, L., Xu, G., Chung, M.K., Johnson, S.C. 2009. Spatialy augmented LP boosting for AD classification with evaulation on the ADNI dataset. NeuroImage 48:138149. PMCID: PMC2773131
Hanson,
J.L., Shritcliff, E.A., Chung, M.K., Oakes,
T.R., Pollak, S.D., Davidson, R.J. 2009.
Chronic life stress is associated with
volumetric reductions in the corpus callosum.
Society for
Research in Child Development. Poster
2008
 Vorperian, H.K., Wang, S., Chung, M.K., Schimek, E.M., Durtschi, R.B., Kent, R.D., Ziegert, A.J., Gentry, L.R. 2008. Anatomical development of the oral and pharyngeal portions of the vocal tract for males and females: an imaging study. The Journal of the Accoustical Soceity of America. 125:16661678. PMCID: PMC2669667
 Lee, J.E., Chung, M.K., Lazar, M., DuBray, M.B., Kim, J., Bigler, E.D., Lainhart, J.E., Alexander, A.L. 2008. A study of diffusion tensor imaging by tissuespecific, smoothing compensated voxelbased analysis. NeuroImage 44:870883.
Chung, M.K. Hartley, R., Dalton,
K.M., Davidson, R.J. 2008. Encoding
cortical surface by spherical harmonics.
Satistica
Sinica 18:12691291 (Special Issue on
Statistical Challenges and Advances in Brain
Science). Matlab
(invited
paper)
 Chung,
M.K. Lee, Jee Eun, Pack, G., Lazar, M.,
Lange, N.T., Lainhart, J.E., Alexander, A.L.
2008. A
unified parametric model of white matter
fiber tracts. MICCAI
Workshop on Computational Diffusion MRI.
 Chung,
M.K.,Qiu, A., Nacewicz, B.M., Dalton, K.M.,
Pollak, S., Davidson, R.J. 2008. Tiling
manifolds
with orthonormal basis. 2nd MICCAI
Workshop on Mathematical Foundations of
Computational Anatomy (MFCA).
 Singh, V., Mukherjee, L., Chung, M.K. 2008. Cortical surface thickness as a classifier: Boosting for autism classification. 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). Lecture Notes in Computer Science (LNCS). 5128:177184.
Chung, M.K., Dalton, K.M., Davidson, R.J. 2008. . Tensorbased cortical surface morphometry via weighed spherical harmonic representation. IEEE Transactions on Medical Imaging 27:11431151 (invited submission based on MMBIA 2006 oral presentation). Matlab
 Chung, D, Chung, M.K, Durtschi, R.B., Vorperian, H.K. 2008. Determining lengthbased measurement consistency from magnetic resonance images. Academic Radiology. 15:13221330.
 Chung, M.K., Kelley, D.J., Dalton, K.M., Davidson, R.J. 2008. Quantifying cortical surface asymmetry via logistic discrimiant analysis. submitted. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). (selected for oral)
 Chung, M.K. Nacewicz, B.M., Wang, S., Dalton, K.M., Pollak, S., Davidson, R.J. 2008. Amydala surface modeling with weighted spherical harmonics. 4th International Workshop on Medical Imaging and Augmented Reality (MIAR). Lecture Notes in Computer Science (LNCS) 5128:177184 (selected for oral)
 Kelley, D.J., Oakes, T.R., Greischar, L.L., Chung, M.K., Ollinger, J., Alexander, A.L., Shelton,S.E., Kalin, N., Davidson, R.J. 2008. Automatic physiological waveform processing for fMRI noise correction and analysis. PLoS ONE 3:e1751.
 Alexander, A., Lee, J.E., Ardekani, B., Chung, M.K., Bigler, E., Lainhart, J. 2008. Evaluation of DTI image analysis using nonlinear spatial normalization and tissuespecif, smoothingcompensated voxel based analysis: application in autism. 14th Annual Meeting for the Organization for Human Brain Mapping.
 Chung, M.K., Kelley, D.J., Dalton, K.M., Davidson, R.J. 2008. Detection of local cortical asymmetry via discriminant power analysis. 14th Annual Meeting of the Organization for Human Brain Mapping. Poster.
 Chung, M.K. 2008. A new validation technique for cortical data smoothing. 14th Annual Meeting of the Organization for Human Brain Mapping. Poster.
2007
 Chung, M.K., 2007 Introduction to random fields, arXiv:2007.09660
 Vorperian, H.K., Durtschi, R.B., Wang, S., Chung, M.K., Ziegert, A.J., Gentry, L.R. 2007. Estimating head circumference from pediatric imaging studies: an improved method. Academic Radiology. 14:11021107.
 Lee, J.E., Bigler, E.D., Alexander. A.L., Lazar, M., Dubray, M.B., Chung, M.K., Johnson, M., Morgan, J., Miller, J.N., McMahon, W.M., Lu, J., Jeong, E.K., Lainhart, J.E. 2007. Diffusion tensor imaging of white mater in the superior temporal gyrus and temporal stem in autism. Neuroscience Letters. 424:127132.
 Chung, M.K. Dalton, K.M., Davidson, R.J. 2007. . Encoding neuroanatomical information using weighted spherical harmonic representation. IEEE Statistical Signal Processing Workshop. Poster. (invited paper)
 Chung, M.K., Dalton, K.M., Davidson, R.J. 2007. Unified cortical asymmetry analysis in autism via weightedSPHARM. Human Brain Mapping conference. Poster (selected as one of the best 65 abstracts)
 Shen, L., Saykin, A.L., Chung, M.K., Huang, H. 2007. Morphometric analysis of hippocampal shape in mild cognitive impairment: an imaging genetics study. IEEE 7th International Symposium on Bioinformatics and Bioengineering (BIBE). 211217.
Chung, M.K., Dalton, K.M., Shen, L., L., Evans, A.C., Davidson, R.J. 2007. Weighted Fourier series representation and its application to quantifying the amount of gray matter. Special Issue of IEEE Transactions on Medical Imaging, on Computational Neuroanatomy. 26:566581. (invited paper). Matlab
 Oakes, T.R., Fox, A.S., Johnstone, T., Chung, M.K., Kalin, N., Davidson, R.J. 2007. Integrating VBM into the general linear model with voxelwise anatomical covariates. NeuroImage 34:500508.
 Chung, M.K. 2007. Correlation Coefficient, The Encyclopedia of Measurement & Statistics, Sage Publications. (invited paper)
 Vorperian, H.K., Schimek, E.M., Wang, S., Chung, M.K., Kent, R.D., Durtschi, R.B., Ziegert, A.J., Gentry, L.R. 2007. Anatomic development of the vocal tract during the first two decades of life: Evidence on perpubertal sexual dimorphism from MRI and CT studies. Acoustical Society of America (ASA) 154th meeting. Poster
 Wang, S., Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2007. Automated diagnosis of autism using Fourier series expansion of corpus callosum boundary. Human Brain Mapping conference. Poster
 Kelley, D.J., Dalton, K.M., Nacewicz, B.M., Johnstone, T., Chung, M.K., Oakes, T.R., Alexander, A.L., Davidson, R.J. 2007. Autism eye gaze behavior depends on functional amygdala connectivity with the superior temporal area. Human Brain Mapping conference. Poster
 Lee, J.E. Chung, M.K., Hsu, D., Alexander, A.L. 2007. Probabilistic connectivity using KullbackLeibler distance, International Socieity for Magnetic Resonance in Medicine (ISMRM) conference. Poster
 Lee, J.E., Lazar, M., Alexander, A.L., Bigler, E., Chung, M.K., Hsu, D., Lainhart, J. 2007. TissueSpecific, SmoothingCompensated VoxelBased Analysis of DTI Data. International Socieity for Magnetic Resonance in Medicine (ISMRM) conference. Poster
2006
 Shen, L., Saykin, A.J., Chung, M.K., Huang, H., Ford, J., Makedon, F., McHugh, T.L., Rhodes, H. 2006. Morphometric analysis of genetic variation in hippocampal shape in mild cognitive impairment: role of an IL6 promoter polymorphism. Computational Systems Bioinformatics (CSB).
 Chung, M.K., Shen, L., Dalton, K.M., Davidson, D.J. 2006. . Multiscale voxelbased morphometry via weighed spherical harmonic representation. Third International Workshop on Medical Imaging and Augmented Reality (MIAR). Lecture Notes in Computer Science (LNCS). 4091:3643 (selected for oral)
 Shen, L., Chung, M.K. 2006. Largescale modeling of parametric surfaces using spherical harmonics. Third International Symposium on 3D Data Processing, Visualization and Transmission (3DPVT).
 Chung, M.K., Robbins, S., Dalton, K.M., Wang, S., Evans, A.C., Davidson, R.J. 2006. Tensorbased cortical morphometry via weighted spherical harmonic representation. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA). (selected for oral presentation as one of the best 13 papers out of 112 submissions)
 Chung, M.K. 2006. Heat kernel smoothing on unit sphere.. IEEE International Symposium on Biomedical Imaging (ISBI) 1430.
 Lee, J.E., Chung, M.K., Alexander, A.L. 2006. . Evaluation of anisotropic filters for diffusion tensor imaging. IEEE International Symposium on Biomedical Imaging (ISBI) 1241.
 Lee, J.E., Chung, M.K., Alexander, A.L. 2006. Evaluation of anisotropic filtering for DTI as a function of SNR. Proceedings of the 14th ISMRM Scientific meeting (selected for oral)
2005
Chung, M.K., Robbins,S., Dalton, K.M., Davidson, Alexander, A.L., R.J., Evans, A.C. 2005. Cortical thickness analysis in autism via heat kernel smoothing. NeuroImage 25:12561265 (selected for cover illustration) Matlab
 Chung, M.K., Robbins, S., Evans, A.C. 2005. Unified statistical approach to cortical thickness analysis. Information Processing in Medical Imaging (IPMI). Lecture Notes in Computer Science (LNCS) 3565:627638. (acceptance rate < 26%). Matlab
 Shen, L., Saykin, A., McHugh, T., West, J., Rabin, L., Wishart, H., Chung, M.K., Makedon, F. 2005. Morphometric analysis of 3D surfaces: appliction to hippocampal shape in mild cognitive impairment. 6th. International conference on Computer vision, Pattern Recognition and Image Processing (CVPRIP). 2005.
Chung,
M.K., Lee J.E., Alexaender, A.L. 2005. Anisotropic
kernel smoothing in diffusion tensor
imaging: theoretical framework. TR1109.
Department of Statistics, University of
WisconsinMadison. (ENAR 2005 invited talk).
 Vorperian, H.K., Chung, M.K., Gentry, L.R., Kent, R.D., Durtschi, R.B., Wang, S., Choih, C.S., Ziegert, A.J. 2005. Vocal tract length development during the first two decades of life: a magnetic resonance imaging study. 150th meeting of Acoustical Society of America (ASA). Poster.
 Shen, L., Saykin, A., McHugh, T., West, J., Rabin, L., Wishart, H., Chung, M.K., Makedon, F. 2005. Morphometric MRI studie of hippocampal shape in MCI using spherical harmonics. Alzheimer's Association International Conference on Prevention of Dementia.
 Chung, M.K., Tulaya, L. 2005. Introducing heat and geodesic kernel smoothing on cortical manifolds, 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
 Chung, M.K., Kim, D.M., Robbins, S., Evans, A.C., Davidson, R.J. 2005. Partial correlation mapping of cognitive measure and cortical thickness in autism, 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
 Xie, X., Chung, M.K., Grace, W. 2005. Magnetic resonance image segmentation with thin plate spline thresholding. 11th Annual Meeting of the Organization for Human Brain Mapping, Toronto. Poster.
 Levy, D.M., Fisher, T.G., Chung, M., Lee, J.H., Lazar, M., Oakes, T.R., Kim, J.S., Alexander, A.L. 2005. Characterization of VoxelBased Variance in DTI Measurements, 13th Meeting of International Society for Magnetic Resonance in Medicine.
 Lee, J.H., Chung, M.K., Oakes, T.E., Alexander, A.L. 2005. Anisotropic Gaussian kernel smoothing of DTI data. 13th Meeting of International Society for Magnetic Resonance in Medicine. 2253.
2004
 Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004. Less white matter concentration in autism: 2D voxelbased morphometry. NeuroImage 23:242251. Data/Matlab
Pizzagalli,
D.A., Oakes, T.R, Fox, A.S., Chung, M.K.,
Larson, C.L., Abercrombie, H.C., Schaefer,
S.M., Benca, R.M., Davidson, D.J. 2004 Functional
but not structural subgenual prefrontal
cortex abnormalities in melcancholia. Molecular
Psychiatry 9:393405
 Wu, Y.C., Field, A.S., Chung,^{ }M.K., Badie, B., Alexander, A.L. 2004. Quantitative analysis of diffusion tensor orientation: theoretical framework Magnetic Resonance in Medicine 52:11461155.
 Chung, M.K., Taylor, J. 2004. Diffusion smoothing on brain surface via finite element method, IEEE International Symposium on Biomedical Imaging (ISBI). 562. Poster. MATLAB
 Chung, M.K. Tang, S. 2004. Nonparametric estimation of cortical thickness, 10th Annual Meeting of the Organization for Human Brain Mapping. Budapest, Poster.
 Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004. 2D Voxelbased morphometry shows less white matter concentration in autism, 10th Annual Meeting of the Organization for Human Brain Mapping. Poster.
 Hoffmann, T.J., Chung, M.K., Dalton, K.M., Alexander, A.L., Wahba, G., Davidson, R.J. 2004. Subpixel curvature estimation of the corpus callosum via splines and its application to autism, 10th Annual Meeting of the Organization for Human Brain Mapping. Poster.
2003
 Chung, M.K., Worsley, K.J., Robbins, S., Evans, A.C. 2003. Tensorbased brain surface modeling and analysis, The proceeding of IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Vol I 467473 (acceptance rate < 24%).
 Chung, M.K., Worsley, K.J., Robbins, S., Paus, P., Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2003. Deformationbased surface morphometry with an application to gray matter Deformation, NeuroImage. 18:198213. (invited paper based on 2001 OHBM abstract, selected for cover illustration)
 Chung, M.K., Lazar, M., Alexander, A.L., Lu., Y., Davidson, R. 2003. Probabilistic connectivity measure in diffusion tensor imaging via anisotropic kernel smoothing, TR 1081. Department of Statististics, Universisty of WisconsinMadison
 Chung, M.K., Alexander, A.L., Lu, Y. 2003. Connection Probability in Diffusion Tensor Imaging via Anisotropic Gaussian Kernel Smoothing, 9th Annual Meeting of the Organization for Human Brain Mapping.
 Chung, M.K., Worsley, K.J., Paus, T., Robbins, S., Taylor, J., Giedd, J.N., Rapoport, J.L., Evans, A.C. 2003. Detecting Gray Matter Maturation via Tensorbased Surface Morphometry. 9th Annual Meeting of the Organization for Human Brain Mapping.
 Fox, A., Oakes, T., Dalton, K., Chung, M.K. 2003. Alexander, A.L., Davidson, R., Preserving Individual Differences for VoxelBased Morphometry (VBM), 9th Annual Meeting of the Organization for Human Brain Mapping.
 Pizzagalli, D.A., Chung, M.K., Oakes, T.R., Davidson, R.J. 2002. Subgenual Prefrontal and Orbitofrontal Cortex Dysfunction in Melancholia: Functional and Structural Correlates Using Concurrent EEG/PET Measurements and VoxelBased MRI Moprhometry analyses, 42nd Annual Meeting of the Society for Psychophysiological Research, Washington, D.C.
 Lu, Y., Chung, M.K. 2002. An AreaPreserving Brain Suface Flattening Method, 8th Annual Meeting of the Organization for Human Brain Mapping.
2001
 Chung, M.K., Worsley, K.J. , Paus, T., Cherif, C., Giedd, J.N., Rapoport, J.L, Evans, A.C. 2001. A unified statistical approach to deformationbased morphometry, NeuroImage 14:595606 (selected for cover illustration)
 J.A. Hanley, L. Joseph, R.W. Platt, Chung, M.K., Patric Belisle 2001. Visualizing the median as the minimumdeviation Location, The American Statistician, 55:150152.
 Chung, M.K. 2001. Statistical morphometry in neuroanatomy, PhD Thesis, McGill University.
 Chung, M.K., K.J. Worsley, J. Taylor, J.O. Ramsay, S. Robbins, A.C. Evans 2001. Diffusion smoothing on the cortical Surface, NeuroImage, 13:S95. PDF Scanned PDF poster
 Taylor, J. ,Worsley, K.J., Chung, M.K., Evans, A.C. 2001. Thresholding nonstationary SPMs with an application to cortical surface mapping, NeuroImage 13S:264.
 Chung, M.K., Worsley, K.J., Robbins S., Paus, T., Taylor, J., Giedd, J.N., Rapoport, J.L., Evans A.C. 2001. Statistical analysis of cortical surface area change, with an application to brain growth, Neuroimage 13S:96.
 Chung, M.K., Worsley, K.J., Taylor, J., Ramsay, J.O. 2001. Diffusion smoothing in brain imaging, The proceedings of the 53rd Session of the International Statistical Institute.
J.S. Kim,
J.S. Lee, D.S. Lee, M.J. Jang, E. Kang, Chung,
M.K., K.J. Worsley, S. Robbins, D.L. Collins,
J.C. Kim, JK. Chung, M.C. Lee 2001.
Longitudinal analysis of local volume changes
in brain of cortical deafness using F18FDG
PET and deformationbased morphometry, NeuroImage, 13S:1202.
2000
 Chung, M.K., Worsley, K.J., Cherif, C., Paus, T., Collins, D.L., Rapoport, J.L., Evans, A.C. 2000. Statistiscal analysis of local volume change, with an application to brain growth, Annual Meeting of the Organization for Human Brain Mapping, NeuroImage 11S:611 poster (selected for oral and NIH travel award).
 Chung, M.K., 2000. The Expectation of the Determinant of a Random Matrix, Image: The Bulletin of the International Linear Algebra Society, 23.
Technical
reports and conference abstracts

Chung, M.K., Huang, S.G., Lyu, I. 2020 Parametric representation of sulcal and gyral trees, IEEE International Symposium on Biomedical Imaging (ISBI) 56
 Hinrichs, C., Chung, M.K. Johnson, S., Singh, V. 2012. SVMbased markers yield superior neuroimagingbased clinical trial outcome measures for Alzheimerâ€™s disease. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 7672
 Kim, S.G., Chung, M.K. Jung, W.H., Jang, J.H., Kwon, J.S. 2012. Altered properties in the cortical thickness network of patients with obsessivecompulsive disorder. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 5645.
 Kim, S.G., Chung, Schaefer, S., Chung, M.K., van Reekum, C., Davidson, R.J. 2012. Statistical power maps for sparse representation of subcortical brain structures. 18th Annual Meeting of the Organization for Human Brain Mapping (OHBM). 5672.
 Lee, H., Chung, M.K., Kang, H., Kim, B.N., Lee, D.S. 2011. Computing the shape of brain network using graph filtration and GromovHaudorff metric. Department of Biostatistics and Medical Informatics TR 215. University of WisconsinMadison.
 Lee, H., Lee, D.S., Kang, H., Kim, B.N., Chung, M.K. 2010. Sparse brain network recovery under compressed sensing. Department of Biostatistics and Medical Informatics TR 213. University of WisconsinMadison.
 Chung, M.K., Worsley, K.J., Nacewicz, B.M., Dalton, K.M., Davidson, R.J. 2009. Multivariate amygdala shape modeling. Department of Biostatistics and Medical Informatics TR 206. University of WisconsinMadison.
 Hanson, J.L., Chung, M.K., Sutterer, M.J., Nacewicz, B.M., Pollak, S.D., Davidson. R.J. 2008. Smaller Amygdalae are associated with early social deprivation in childhood. Society for Neuroscience Meeting. Abstracts. 477.11/QQ10. Poster
 Vorperian, H.K., Wang, S., Chung, M.K., Durtschi, R.B., Schimek, E.M., Gentry, L.R., Kent, R.D. 2008. Relational growth of oral and pharyngeal structures with vocaltract length during the first two decades of life as visualized from MRI and CT studies. American SpeechLanguage Hearing Association (ASHA) Convention. Session 1838. Poster 244.
 Wang, S., 2008. Weighted Fourier image analysis and modeling. PhD thesis. University of WisconsinMadison.
 Kelley,
D.J. 2008. Functional connectivity of
Affective Face Processing Network in
Autism. PhD thesis. University of
WisconsinMadison.
 Chung, M.K. Nacewicz, B.M., Wang, S., Dalton, K.M., Pollak, S., Davidson, R.J. 2008. Amydala surface modeling with weighted spherical harmonics. Department of Biostatistics and Medical Informatics TR 202, University of WisconsinMadison.
 Chung, M.K., Dalton, K.M., Davidson, R.J. 2007. Tensorbased cortical surface morphometry via weighed spherical harmonic representation. Department of Biostatistics and Medical Informatics TR 199, University of WisconsinMadison.
 Chung, M.K. Hartley, R., Dalton, K.M., Davidson, R.J. 2007. Encoding cortical surface by spherical harmonics. Department of Biostatistics and Medical Informatics TR 198, University of WisconsinMadison.
 Lee, J.E. 2006. Anistropic acquisition and analysis for diffusion tensor magnetic resonance imaging. PhD thesis. University of WisconsinMadison.
 Xie, X., Chung, M.K., Wahba, G. 2006. Magnetic resonance image segmentation with thin plate spline thresholding. TR 1105. Department of Statististics, Universisty of WisconsinMadison.
 Chung, M.K., Dalton, K.M., Shen, L., L., Evans, A.C., Davidson, R.J. 2006. Unified cortical surface morphometry and its appliction to quantifying amount of gray matter. TR 1122. Department of Statistics, Univ. of WisconsinMadison.
 Chung, M.K., Shen, L., Dalton, K.M., Davidson, D.J. 2006. Multiscale voxelbased morphometry via weighed spherical harmonic representation. submitted. TR 1121. Department of Statistics, Univ. of WisconsinMadison.
 Chung, M.K., Shen, L., Kelley, D.J., Dalton, K.M., Robbins, S., Evans, A.C., Davidson, R.J. 2006. Weighted spherical harmonic representation and its application to cortical analysis. TR 1118. Department of Statistics, Univ. of WisconsinMadison.
 Chung, M.K., Robbins, S., Dalton, K.M., Wang, S., Evans, A.C., Davidson, R.J. 2006. Model building in twosphere via GaussWeierstrass kernel smoothing and its application to cortical analysis, Part II: tensorbased cortical morphometry via weighted spherial harmonic representation. TR 1116. Department of Statistics, Univ. of WisconsinMadison.
 Chung, M.K. 2006. Model building in twosphere via GaussWeierstrass kernel smoothing and its application to cortical analysis, Part I: GaussWeierstrass kernel smoothing on unit sphere. TR 1115. Department of Statistics, Univ. of WisconsinMadison.
 Wang, S, Chung, M.K. 2005. Paramerization and classification of closed anatomical curves. TR 1113. Department of Statistics, University of WisconsinMadison.
Kelley, D.J., Dalton, K.M., Nacwicz, B.M.,
Johnstone, T., Chung, M.K., Schaefer, H.S.,
Oakes, T.R., Alexander, A.L., Davidson, R.J.
2005. Altered functional connectivity of
amygdala emotional face processing circuitry
in autism. The Society for Neuroscience
(SFN) meeting.
 Xie, X. 2005. Smoothing in magnetic resonance image analysis and a hybrid loss for support vector machine. PhD thesis. TR 1110. Department of Statistics, University of WisconsinMadison.
 Chung, M.K., Kim, D.M., Kelley, D.J., Robbins, S., Evans, A.C., Davidson, R.J. 2005. Partial correlation mapping of anatomical and behavioral measures and its application to autism. TR1109. Department of Statistics, University of WisconsinMadison.
 Chung, M.K. 2004. Heat kernel smoothing and its application to cortical manifolds. TR 1090. Department of Statististics, Universisty of WisconsinMadison.
 Chung, M.K., Dalton, K.M., Alexander, A.L., Davidson, R.J. 2004. White Matter Density of Corpus Callosum in Autism: 2D VoxelBased Morphometry. TR. 1089. Department of Statististics, Universisty of WisconsinMadison.
 Hoffmann, T.J. 2004. Subpixel morphometric analysis of corpus callosum with application to autism. BSc thesis. TR 1101. Department of Statistics, University of WisconsinMadison.